Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4298 170 2e-37 >seq4298 Length=5336 Score = 170 bits (188), Expect = 2e-37 Identities = 397/592 (67%), Gaps = 14/592 (2%) Strand=Plus/Plus Query 116615 TTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGG 116674 || || || |||||| || || ||| |||||||| || || ||||| ||||| ||| Sbjct 1421 TTTCCAATTCAATACAAAGATATCTGGGAGATGTACAAGAAAGCGGAGGCATCGTTTTGG 1480 Query 116675 ACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGAC----TGGGAGCGC-TTGAACG 116729 || ||||| || || || | | | | ||| | | | ||| | | ||||| Sbjct 1481 ACAGTCGAAGAAGTCGATTT-----AAGTCGCGATCTAGATCATTGGAACTCGTTGAATA 1535 Query 116730 ACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCG 116789 | || || ||||||||| || ||| | || || || || || || || || || | Sbjct 1536 AGAATGAAAAACATTTCATCTCTCATGTGTTAGCATTCTTTGCTGCAAGTGATGGAATAG 1595 Query 116790 TCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCT 116849 | || |||||||| | ||||||||| || || || ||| | | ||||| || || | Sbjct 1596 TTAATGAGAATCTAGCTGAGCGTTTCATTCGTGATGTTCAGATACCAGAGGCTCGATGTT 1655 Query 116850 TCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCG 116909 | || || |||||||||||||| || || | ||||| |||||||||||| |||||| Sbjct 1656 TTTATGGATTTCAGATCGCCATCGAAAATATTCACTCTGAAATGTATTCGTTGCTCATCA 1715 Query 116910 ACACGTACGTGCGCTCTTCGGAGGAGA-AGCTCCGTTTGTTGAACGCCATCGAGACGATG 116968 | || || | | | |||| || | | | || || ||||| | || || Sbjct 1716 ATACCTATATAAAAGATAAATATGAGAGAGAT-TTTCTTTTCAATGCCATTCAAACATTG 1774 Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAG-GCCGC 117027 || || ||| | |||| || | ||||| | | |||| | | | || || | Sbjct 1775 CCTTGTGTCGAGAAGAAAGCGAAATGGGCTATCAGATGGA-CTCAAGATGATAGAGTTAG 1833 Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087 ||| | || || || || || ||||| |||||||| || |||| || || ||| || Sbjct 1834 CTTTGCTGAACGTCTTGTTGCGTTCGCTGCCGTCGAAGGAATCTTTTTCTCTGGCTCGTT 1893 Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGA 117147 || || || |||||||| || ||||| || || ||||| ||| |||||||||| || || Sbjct 1894 TGCGGCTATCTTTTGGCTTAAAAAACGAGGACTGATGCCTGGCTTGACTTTCAGTAATGA 1953 Query 117148 GCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTC 117199 | ||||| | || || || || ||||| || ||||| |||||||| ||| Sbjct 1954 ATTGATCTCGCGTGATGAAGGACTTCATTGTGATTTTGCTTGTTTGCTTTTC 2005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515097737073600