Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq6148 91.5 1e-13 >seq6148 Length=42148 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 97291 TTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATC 97350 ||||| ||||||| | ||||| | ||| |||| || || | || || | || | Sbjct 25623 TTCCAGGCACACAAAATCATTCGACGATCATTTGGATTCGTCTTAATAGTTTCGATCAAT 25564 Query 97351 TGCTTTAATTGATCAACGCCTTCTCCACCATAATT---GTGCTTAAGACCTTGATATTCT 97407 | || |||||| || |||| ||| |||||| || ||| | | ||||||| Sbjct 25563 TTAGATAGTTGATCGACACCTTGTCCCTCATAATCAGCGTTCTTGTCAAC---ATATTCT 25507 Query 97408 GCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCA 97467 || || ||||| | |||||| || |||||||| ||||| || ||||||||||||||||| Sbjct 25506 GCACCGAAATGGCGCCATTGAAAGCCATAAACTGGTCCGAGATCTCCTTCTTCTCTATCG 25447 Query 97468 CAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAAT 97517 ||| ||||| ||| | | | || || || ||||| ||||| || Sbjct 25446 TTGAAGCCAAGAGAATCGAGAAATTCTCTCGAACCGTTTGCGTCCCATAT 25397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346704289530200