Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq135 167 4e-36 seq4581 150 3e-31 seq718 150 3e-31 seq6148 91.5 2e-13 >seq135 Length=1279 Score = 167 bits (184), Expect = 4e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || ||| | || || ||||| || ||| | || ||||| | Sbjct 660 ATGCAGATTTTCGTTAAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCC 719 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| ||||||||||||||||||||||| ||||| |||||| Sbjct 720 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 779 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| || |||||||| || ||| || ||||||| ||||| ||| Sbjct 780 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTACAAT 839 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||| ||||| || ||||| || ||| | || |||||||| Sbjct 840 ATTCAAAAAGAATCCACTTTACACTTGGTATTGCGTCTCCGTGGTGGTAT 889 Score = 149 bits (164), Expect = 9e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || ||| | || || ||||| || ||| | || ||||| | Sbjct 204 ATGCAGATTTTCGTGAAAACATTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 263 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| ||||| || || ||||||||||| ||||| |||||| Sbjct 264 GATACTATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAA 323 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| || |||||||| || ||| ||||||| | ||||||||| Sbjct 324 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAAT 383 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| ||||| || ||||| || ||| | || |||||||| Sbjct 384 ATCCAAAAAGAATCCACTTTACACTTGGTGTTGCGTCTCCGGGGTGGTAT 433 Score = 149 bits (164), Expect = 9e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || | || || || || || ||| | || | ||| | Sbjct 432 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAGACCATTACTTTGGAAGTGGAACCTTCC 491 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| ||||||||||||||||||||||| || || ||||| Sbjct 492 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 551 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || |||||||| || |||||||| || ||| ||||||| | ||||||||| Sbjct 552 CAACGTCTGATTTTTGCTGGCAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAAT 611 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| |||||||| ||||| || ||| | || ||||| || Sbjct 612 ATCCAAAAAGAATCTACTTTGCACTTGGTGTTGCGTCTCCGTGGTGGCAT 661 Score = 147 bits (162), Expect = 3e-30 Identities = 181/244 (74%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 124566 GGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAGAAA 124625 || |||||||| ||| | || | ||| | ||||| ||| ||| | ||| ||| Sbjct 3 GGAAAAACTATCACTTTGGAAGTGGAACCTTCCGATACGATTGAAAATGTCAAAGCTAAA 62 Query 124626 ATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAA 124685 |||||||| ||||||||||| ||||| ||||||||| | | ||||| || || |||||| Sbjct 63 ATTCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTTTGATTTTCGCTGGTAAACAA 122 Query 124686 TTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTG 124745 || || ||| || ||||||| ||||| ||||| || |||||||| |||||||||||| Sbjct 123 TTGGAAGATGGTAGAACATTGAGCGATTACAATATCCAGAAAGAATCCACTTTGCATTTG 182 Query 124746 GTTTTACGTTTACGAGGTGGTAT-TAAAAATTCAT--AAAAATTGATTGTAAATAAATAT 124802 || || || | || |||||||| | | ||| | ||| ||||| || ||| || || Sbjct 183 GTGTTGCGACTCCGTGGTGGTATGCAGATTTTCGTGAAAACATTGACTGGAAA-AACAAT 241 Query 124803 CACT 124806 |||| Sbjct 242 CACT 245 Score = 107 bits (118), Expect = 3e-18 Identities = 128/170 (75%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 124640 AGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCG 124699 |||||| || || ||||| ||| | | |||||||| || |||||||| || ||| | | Sbjct 1040 AGGTATTCCGCCAGATCAGCAACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGCAG 1099 Query 124700 AACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACG 124759 |||||| ||||| ||||| || |||||||| |||||||||||||| || || | || Sbjct 1100 AACATTGAGCGATTACAATATCCAGAAAGAATCCACTTTGCATTTGGTGTTGCGACTCCG 1159 Query 124760 AGGTGGTAT-TAAAAATTCATAAAAA--TTGATTGTAAATAAATATCACT 124806 |||||||| ||| ||| | |||| |||| || ||| || ||| ||| Sbjct 1160 TGGTGGTATGCAAATTTTCGTGAAAACTTTGACTGGAAA-AACTATTACT 1208 >seq4581 Length=275 Score = 150 bits (166), Expect = 3e-31 Identities = 121/146 (83%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||| ||||||||||||||||| || || ||||| ||| | || |||||||| || ||| Sbjct 263 AAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAGCAACGTCTAATTTTTGCTGGCAAA 204 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||||| || ||| || ||||||| |||||||| ||||| |||||||||||||||||| Sbjct 203 CAATTGGAAGATGGTAGAACATTGAGCGATTATAACATTCAGAAAGAATCAACTTTGCAT 144 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||| | || |||||||| Sbjct 143 TTGGTATTGCGTCTTCGTGGTGGTAT 118 >seq718 Length=674 Score = 150 bits (166), Expect = 3e-31 Identities = 203/279 (73%), Gaps = 13/279 (5%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || | || || ||||| || ||| | || ||||| | Sbjct 274 ATGCAGATTTTCGTTAAAACTTTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 333 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| | ||| ||||| || || ||||||||||| ||||| |||||| Sbjct 334 GATACAATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAA 393 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAA--------G 124710 ||| | | ||||| || || |||||||| || ||| ||||||| | ||| | Sbjct 394 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGTCGAAC-TCNGAACTCTCAGCG 452 Query 124711 ATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-T 124769 |||||||||| ||||||||||| |||||||| ||||| || ||| | || |||||||| Sbjct 453 ATTATAATATCCAAAAAGAATCTACTTTGCACTTGGTGTTGCGTCTCCGTGGTGGTATGC 512 Query 124770 AAAAATTCATAAAAA--TTGATTGTAAATAAATATCACT 124806 ||| ||| | |||| |||| || ||| || ||||||| Sbjct 513 AAATTTTCGTGAAAACTTTGACTGGAAA-AACTATCACT 550 Score = 145 bits (160), Expect = 1e-29 Identities = 197/271 (73%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || | || || ||||| || ||| | || |||| | Sbjct 46 ATGCAGATTTTCGTGAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTTGAGCCTTCC 105 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| ||||||||||| ||||||||||| || || |||||| Sbjct 106 GATACGATTGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAA 165 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | ||||| || || |||||||| || ||| ||||||| | ||||||||| Sbjct 166 CAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAAT 225 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 || ||||||||||| |||||||||||||| || || | || |||||||| | | ||| Sbjct 226 ATCCAAAAAGAATCCACTTTGCATTTGGTGTTGCGACTCCGTGGTGGTATGCAGATTTTC 285 Query 124778 ATAAAAA--TTGATTGTAAATAAATATCACT 124806 | |||| |||| || ||| || |||||| Sbjct 286 GTTAAAACTTTGACTGGAAA-AACAATCACT 315 Score = 107 bits (118), Expect = 3e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || | || || |||||||| ||| | || |||| | Sbjct 509 ATGCAAATTTTCGTGAAAACTTTGACTGGAAAAACTATCACTTTGGAAGTTGAGCCTTCC 568 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| ||||||||||||||||||||||| ||||| |||||| Sbjct 569 GATACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 628 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAAC 124702 ||| | | ||||| || || |||||||| || ||| ||||||| Sbjct 629 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGTCGAAC 672 >seq6148 Length=42148 Score = 91.5 bits (100), Expect = 2e-13 Identities = 167/239 (70%), Gaps = 12/239 (5%) Strand=Plus/Minus Query 205726 TCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCT 205785 |||| ||||| ||||| ||||| ||||||||||| ||||||||||| || | ||| ||| Sbjct 25518 TCAACATATTCTGCACCGAAATGGCGCCATTGAAAGCCATAAACTGGTCCGAGATCTCCT 25459 Query 205786 TCTTTTCTATCATTAAAACCACGtttttttatatattttaatgatccattttcatcccaa 205845 |||| |||||| || || ||| | | | | ||| | || || ||| | ||||| Sbjct 25458 TCTTCTCTATCGTTGAAGCCAAGAGAATCGAGAAATTCTCTCGAACCGTTTGCGTCCCAT 25399 Query 205846 atatggattcctttattttttaGAA---TATTT-GTATTAGTTGATCCAGATATAAACCA 205901 || | || | || |||||| ||| | ||| | || |||||| ||| || ||||| Sbjct 25398 ATTTTGA--CATT--TTTTTTCGAAAGTTCTTTCGAATCAGTTGAGCCACGAATGAACCA 25343 Query 205902 TAATAATTCTTCAACAATTCCTC--TCCAAAACATTGATTTTGTTGTAAATAATGGAAA 205958 | | ||||||| || |||| | |||||| ||||||||| || || || || Sbjct 25342 GAGAAGCTCTTCAATGATGCCTCGATAGAAAACA--CGTTTTGTTGTCAACAACGGCAA 25286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755277901248000