Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq135 118 9e-22 seq718 116 3e-21 >seq135 Length=1279 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||||||||| | ||||| |||||||| || || |||||||| | ||| || ||| Sbjct 644 CAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATC 585 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | ||||| ||||| | || ||||| |||||||| ||||| || || || || || Sbjct 584 TTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTCTTTATC 525 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | |||||| ||| || | ||| | ||| || | || || || | || | || Sbjct 524 TTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGTAATGGT 465 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||| |||||| |||||||||||||| Sbjct 464 CTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | ||| |||||||| | || || ||||||||||| |||||||||| Sbjct 888 TACCACCACGGAGACGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGC 829 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| || | ||| || | ||||| ||||| | || | ||| || ||||| || | Sbjct 828 TCAATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTG 769 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || || ||| |||||| ||| || | ||| | ||| || | || | Sbjct 768 GAATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAA 709 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || | || | ||||| || |||| ||||| || |||||||||||| Sbjct 708 CTTCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCATG 659 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | |||||||||||| | || || |||||||| || || ||||||| Sbjct 432 TACCACCCCGGAGACGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGC 373 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | | ||| || ||| || | ||||| ||||| | || | ||| || ||||| || | Sbjct 372 TGAGAGTTCGACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTG 313 Query 118630 GTATGCCCTCCTTGT-CTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCG 118688 | || || || |||| |||| ||||| ||| || | ||| | || || | || Sbjct 312 GAATACCTTCTTTGTCCTGT-ATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCA 254 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| || |||| ||||| || ||||||||||| Sbjct 253 ACTTCCAAAGTGATTGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || ||||||||| || | || || ||||| || || |||||||||| Sbjct 204 TACCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGC 145 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| || | ||| || | ||||| |||||| | || | ||| || ||||| || | Sbjct 144 TCAATGTTCTACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTG 85 Query 118630 GTATGCCCTCCTTGTCTGTAATTTT 118654 | || || || |||||| |||||| Sbjct 84 GAATACCTTCTTTGTCTTGAATTTT 60 >seq718 Length=674 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || ||||||||| || | || || |||||||| || || ||||||| Sbjct 274 TACCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGC 215 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | | ||| || ||| || | ||||| |||||| | || | ||| || ||||| |||| Sbjct 214 TGAGAGTTCGACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAG 155 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || |||||| |||||| ||| || | ||| | || || | ||| | Sbjct 154 GAATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAA 95 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | ||||| || |||| |||||| || ||||||||||| Sbjct 94 CTTCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46 Score = 93.3 bits (102), Expect = 4e-14 Identities = 165/237 (70%), Gaps = 9/237 (4%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | |||||||||||| | ||||| |||||||| || || ||||||| Sbjct 509 TACCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGC 450 Query 118570 TCATAGTGC-GCGT------ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGA 118622 | | ||| | | || ||| || | ||||| |||||| | || | ||| || ||| Sbjct 449 TGAGAGTTCNGAGTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGA 390 Query 118623 TCGGGAGGTATGCCCTCCTTGT-CTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGT 118681 || || || || || || |||| |||| ||||| ||| || | ||| | || || | Sbjct 389 TCTGGTGGAATACCTTCTTTGTCCTGT-ATTTTAGCTTTGACATTTTCAATTGTATCGGA 331 Query 118682 GCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || | || | ||||| || |||| |||||| || ||||||||||| Sbjct 330 AGGTTCAACTTCCAAAGTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433730681371120