Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq135 118 9e-22
seq718 116 3e-21
>seq135
Length=1279
Score = 118 bits (130), Expect = 9e-22
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
|||||||||||| | ||||| |||||||| || || |||||||| | ||| || |||
Sbjct 644 CAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATC 585
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
|| | ||||| ||||| | || ||||| |||||||| ||||| || || || || ||
Sbjct 584 TTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTCTTTATC 525
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
| |||||| ||| || | ||| | ||| || | || || || | || | ||
Sbjct 524 TTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGTAATGGT 465
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || |||| |||||| ||||||||||||||
Sbjct 464 CTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | | ||| |||||||| | || || ||||||||||| ||||||||||
Sbjct 888 TACCACCACGGAGACGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGC 829
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
||| || | ||| || | ||||| ||||| | || | ||| || ||||| || |
Sbjct 828 TCAATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTG 769
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| || || || || ||| |||||| ||| || | ||| | ||| || | || |
Sbjct 768 GAATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAA 709
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
| || | || | ||||| || |||| ||||| || ||||||||||||
Sbjct 708 CTTCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCATG 659
Score = 93.3 bits (102), Expect = 4e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | | |||||||||||| | || || |||||||| || || |||||||
Sbjct 432 TACCACCCCGGAGACGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGC 373
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| | ||| || ||| || | ||||| ||||| | || | ||| || ||||| || |
Sbjct 372 TGAGAGTTCGACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTG 313
Query 118630 GTATGCCCTCCTTGT-CTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCG 118688
| || || || |||| |||| ||||| ||| || | ||| | || || | ||
Sbjct 312 GAATACCTTCTTTGTCCTGT-ATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCA 254
Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || | || | ||||| || |||| ||||| || |||||||||||
Sbjct 253 ACTTCCAAAGTGATTGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204
Score = 82.4 bits (90), Expect = 7e-11
Identities = 105/145 (72%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | || ||||||||| || | || || ||||| || || ||||||||||
Sbjct 204 TACCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGC 145
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
||| || | ||| || | ||||| |||||| | || | ||| || ||||| || |
Sbjct 144 TCAATGTTCTACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTG 85
Query 118630 GTATGCCCTCCTTGTCTGTAATTTT 118654
| || || || |||||| ||||||
Sbjct 84 GAATACCTTCTTTGTCTTGAATTTT 60
>seq718
Length=674
Score = 116 bits (128), Expect = 3e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | || ||||||||| || | || || |||||||| || || |||||||
Sbjct 274 TACCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGC 215
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| | ||| || ||| || | ||||| |||||| | || | ||| || ||||| ||||
Sbjct 214 TGAGAGTTCGACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAG 155
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| || || || |||||| |||||| ||| || | ||| | || || | ||| |
Sbjct 154 GAATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAA 95
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
| || | || | ||||| || |||| |||||| || |||||||||||
Sbjct 94 CTTCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46
Score = 93.3 bits (102), Expect = 4e-14
Identities = 165/237 (70%), Gaps = 9/237 (4%)
Strand=Plus/Minus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | | |||||||||||| | ||||| |||||||| || || |||||||
Sbjct 509 TACCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGC 450
Query 118570 TCATAGTGC-GCGT------ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGA 118622
| | ||| | | || ||| || | ||||| |||||| | || | ||| || |||
Sbjct 449 TGAGAGTTCNGAGTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGA 390
Query 118623 TCGGGAGGTATGCCCTCCTTGT-CTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGT 118681
|| || || || || || |||| |||| ||||| ||| || | ||| | || || |
Sbjct 389 TCTGGTGGAATACCTTCTTTGTCCTGT-ATTTTAGCTTTGACATTTTCAATTGTATCGGA 331
Query 118682 GCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || || | || | ||||| || |||| |||||| || |||||||||||
Sbjct 330 AGGTTCAACTTCCAAAGTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433730681371120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |