Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq9425 100 3e-16 seq17802 91.5 2e-13 >seq9425 Length=8889 Score = 100 bits (110), Expect = 3e-16 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 2376 AAAAAAATTCTCCGCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 2435 Query 60117 TCACCACTATACTACCGAGGATT 60139 | |||||||||||| || ||||| Sbjct 2436 TTACCACTATACTAACGCGGATT 2458 >seq17802 Length=17061 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 4563 CTCCGCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 4622 Query 60126 TACTACCGAGGAT 60138 ||||| || |||| Sbjct 4623 TACTAACGCGGAT 4635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571682794000800