Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq135 122 1e-22 seq4581 116 6e-21 seq718 116 6e-21 >seq135 Length=1279 Score = 122 bits (134), Expect = 1e-22 Identities = 100/122 (82%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || ||||| || |||||||||||||| ||||||||||| ||||||| | ||| Sbjct 643 AACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCT 584 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || |||||||| ||||||||||||| | ||||||||| |||||||| |||||||||||| Sbjct 583 TCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCT 524 Query 146186 TG 146187 || Sbjct 523 TG 522 Score = 120 bits (132), Expect = 5e-22 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || ||||| |||||||| |||||||| ||||||||||| ||||||| | ||| Sbjct 415 AACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCT 356 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || |||||||| |||||||||||||| | ||| ||||| || ||||| |||||||| || Sbjct 355 TCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCC 296 Query 146186 TGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTT 146245 || |||||| ||| ||| ||||| | ||||||||| Sbjct 295 TGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTGATTGTT 236 Query 146246 TTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || |||||||| | ||| || ||||| Sbjct 235 TTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204 Score = 116 bits (128), Expect = 6e-21 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 |||||||| |||||||| |||||||| ||||| ||||| | ||||| | ||| Sbjct 871 AATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTCAATGTTCTACCATCT 812 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || |||||||| |||||||||||||| | ||| ||||| || ||||| |||||||||||| Sbjct 811 TCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTATCT 752 Query 146186 TGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTT 146245 || ||||| ||| ||| ||||| | || || ||| Sbjct 751 TGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTT 692 Query 146246 TTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || |||||||||| ||| || ||||| Sbjct 691 TTTCCAGTCAATGTTTTAACGAAAATCTGCAT 660 Score = 102 bits (112), Expect = 1e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||| || |||||||| ||||| |||||||| ||||| ||||| Sbjct 1165 CCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTC 1106 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||||| ||| || |||||||| |||||||||||||| | ||||||||| || ||| Sbjct 1105 AATGTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGCGGA 1046 Query 146171 ATTCCT 146176 || ||| Sbjct 1045 ATACCT 1040 >seq4581 Length=275 Score = 116 bits (128), Expect = 6e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | ||||||||||| ||||| |||||||| || |||||||| Sbjct 121 CCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTCTGAATGTTATAATCGCTC 180 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| || |||||||| ||||||||||| | | ||||||||| |||||| Sbjct 181 AATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATTAGACGTTGCTGATCTGGAGGA 240 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 241 ATACCTTCTTTATCTTG 257 >seq718 Length=674 Score = 116 bits (128), Expect = 6e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||| || |||||||| ||||| |||||||| ||||||||||| Sbjct 272 CCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTG 213 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||| | ||| || |||||||| ||||| |||||||| | ||| ||||| |||||| Sbjct 212 AGAGTTCGACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 153 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 152 ATACCTTCTTTGTCTTG 136 Score = 104 bits (114), Expect = 3e-17 Identities = 150/219 (68%), Gaps = 7/219 (3%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAAT--CTGAAA-----GAGTTCT 146118 || ||||| || |||||||||||||| |||||||||| |||| | |||||| Sbjct 492 AACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCNGAGTTCG 433 Query 146119 GCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTC 146178 | ||| || |||||||| ||||| |||||||| | ||| ||||| || ||||| ||||| Sbjct 432 ACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTC 373 Query 146179 TTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGT 146238 ||| || || ||||| ||| ||| ||||| | || Sbjct 372 TTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGAAGGTTCAACTTCCAAAGT 313 Query 146239 GATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||||||| || || || ||||||| ||| || ||||| Sbjct 312 GATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743351113651200