Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq135 122 1e-22
seq4581 116 6e-21
seq718 116 6e-21
>seq135
Length=1279
Score = 122 bits (134), Expect = 1e-22
Identities = 100/122 (82%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125
|| ||||| || |||||||||||||| ||||||||||| ||||||| | |||
Sbjct 643 AACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCT 584
Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185
|| |||||||| ||||||||||||| | ||||||||| |||||||| ||||||||||||
Sbjct 583 TCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCT 524
Query 146186 TG 146187
||
Sbjct 523 TG 522
Score = 120 bits (132), Expect = 5e-22
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125
|| ||||| |||||||| |||||||| ||||||||||| ||||||| | |||
Sbjct 415 AACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCT 356
Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185
|| |||||||| |||||||||||||| | ||| ||||| || ||||| |||||||| ||
Sbjct 355 TCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCC 296
Query 146186 TGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTT 146245
|| |||||| ||| ||| ||||| | |||||||||
Sbjct 295 TGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTGATTGTT 236
Query 146246 TTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
|| || || |||||||| | ||| || |||||
Sbjct 235 TTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204
Score = 116 bits (128), Expect = 6e-21
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125
|||||||| |||||||| |||||||| ||||| ||||| | ||||| | |||
Sbjct 871 AATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTCAATGTTCTACCATCT 812
Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185
|| |||||||| |||||||||||||| | ||| ||||| || ||||| ||||||||||||
Sbjct 811 TCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTATCT 752
Query 146186 TGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTT 146245
|| ||||| ||| ||| ||||| | || || |||
Sbjct 751 TGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTT 692
Query 146246 TTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
|| || || |||||||||| ||| || |||||
Sbjct 691 TTTCCAGTCAATGTTTTAACGAAAATCTGCAT 660
Score = 102 bits (112), Expect = 1e-16
Identities = 98/126 (78%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | |||| || |||||||| ||||| |||||||| ||||| |||||
Sbjct 1165 CCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTC 1106
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| ||||||| ||| || |||||||| |||||||||||||| | ||||||||| || |||
Sbjct 1105 AATGTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGCGGA 1046
Query 146171 ATTCCT 146176
|| |||
Sbjct 1045 ATACCT 1040
>seq4581
Length=275
Score = 116 bits (128), Expect = 6e-21
Identities = 108/137 (79%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | ||| | ||||||||||| ||||| |||||||| || ||||||||
Sbjct 121 CCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTCTGAATGTTATAATCGCTC 180
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| ||||| | ||| || |||||||| ||||||||||| | | ||||||||| ||||||
Sbjct 181 AATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATTAGACGTTGCTGATCTGGAGGA 240
Query 146171 ATTCCTTCTTTATCTTG 146187
|| ||||||||||||||
Sbjct 241 ATACCTTCTTTATCTTG 257
>seq718
Length=674
Score = 116 bits (128), Expect = 6e-21
Identities = 108/137 (79%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | |||| || |||||||| ||||| |||||||| |||||||||||
Sbjct 272 CCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTG 213
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
||||||| | ||| || |||||||| ||||| |||||||| | ||| ||||| ||||||
Sbjct 212 AGAGTTCGACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 153
Query 146171 ATTCCTTCTTTATCTTG 146187
|| |||||||| |||||
Sbjct 152 ATACCTTCTTTGTCTTG 136
Score = 104 bits (114), Expect = 3e-17
Identities = 150/219 (68%), Gaps = 7/219 (3%)
Strand=Plus/Minus
Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAAT--CTGAAA-----GAGTTCT 146118
|| ||||| || |||||||||||||| |||||||||| |||| | ||||||
Sbjct 492 AACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCNGAGTTCG 433
Query 146119 GCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTC 146178
| ||| || |||||||| ||||| |||||||| | ||| ||||| || ||||| |||||
Sbjct 432 ACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTC 373
Query 146179 TTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGT 146238
||| || || ||||| ||| ||| ||||| | ||
Sbjct 372 TTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGAAGGTTCAACTTCCAAAGT 313
Query 146239 GATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
||||||||| || || || ||||||| ||| || |||||
Sbjct 312 GATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743351113651200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |