Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq4298 239 4e-58 >seq4298 Length=5336 Score = 239 bits (264), Expect = 4e-58 Identities = 598/890 (67%), Gaps = 30/890 (3%) Strand=Plus/Minus Query 15942 TTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATAT 16001 ||||||||||||| ||| | ||||| || ||||| ||||| || || || || || | Sbjct 2288 TTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAAGAGATCT 2229 Query 16002 TTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCG-CATCCCAATTCCAAC 16060 |||||| ||| || |||||||||| | || |||| | ||||| | || | | Sbjct 2228 GTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCC-AGCTCGACC 2170 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120 || || | ||| || |||| || |||| |||| ||| | || ||||| || Sbjct 2169 AACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGATTCCGATC 2110 Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180 || ||||| | || || || ||||| | || || || | ||||||| ||| Sbjct 2109 AAGGAGACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCTTTGGTGACA 2050 Query 16181 ATATCTCTTA-CTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGC 16239 || | | || ||| || || | || | | |||| || | | |||||| Sbjct 2049 ATCTTCAAGATCTTCACCCGAGAA-GGTCGATTGACGATGTGTCGGAAAAGCAAACAAGC 1991 Query 16240 AAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTT--TGAAAATGTAAGACCT 16297 |||||||||||| | |||||| || | || || || || ||||| | ||| || Sbjct 1990 AAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGTC-AAG-CCA 1933 Query 16298 GGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATA 16357 ||||| |||||||||||||||| |||||| ||||| ||||| || ||||| || || || Sbjct 1932 GGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAAAAGATT 1873 Query 16358 CCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT---TCTAtttttactttct 16414 ||||| || || || || ||||| | || ||| | | | ||||| | || Sbjct 1872 CCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCATC---TTGA 1816 Query 16415 atccattttttagcccaatttgctttttgtttAACACAGTTCA-TGTTCTCTATTGCATT 16473 ||||| | ||||||| || ||||| | | ||||| || |||| | || ||||| Sbjct 1815 GTCCATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTT-TGAATGGCATT 1757 Query 16474 AAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACAT 16533 || | | ||| | | || | ||||| ||||| |||| || || || |||||| Sbjct 1756 GAAAAGAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGAATACAT 1697 Query 16534 TTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATAT 16593 ||| || |||||||| || || || |||||||| |||||||| |||| ||| || | ||| Sbjct 1696 TTCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGGTAT 1637 Query 16594 TTGTACTTCA-GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTG 16652 || || ||| || | |||| | | |||| || || |||||||||||||| || || | Sbjct 1636 CTGAACATCACGAATGAAACGCT-CAGCTAGATTCTCATTAACTATTCCATCACTTGCAG 1578 Query 16653 CAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGT 16712 |||| || || | | || || |||| |||||| | ||| | || ||| ||| Sbjct 1577 CAAAGAATGCTAACACATGAGAGATGAAATGTTTTTCAT--TCTTA----TTCAACGAGT 1524 Query 16713 CAGAAAAATCT--TTTG----ATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAG 16766 || |||| | | ||||||||| ||||| || |||||||| || || | | Sbjct 1523 TCCAATGATCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCG 1464 Query 16767 CCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACA 16816 | || || ||||| | ||| || |||| ||| ||| ||||||| |||| Sbjct 1463 CTTTCTTGTACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACA 1414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462402962796000