Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq4298 239 4e-58
>seq4298
Length=5336
Score = 239 bits (264), Expect = 4e-58
Identities = 598/890 (67%), Gaps = 30/890 (3%)
Strand=Plus/Minus
Query 15942 TTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATAT 16001
||||||||||||| ||| | ||||| || ||||| ||||| || || || || || |
Sbjct 2288 TTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAAGAGATCT 2229
Query 16002 TTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCG-CATCCCAATTCCAAC 16060
|||||| ||| || |||||||||| | || |||| | ||||| | || | |
Sbjct 2228 GTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCC-AGCTCGACC 2170
Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120
|| || | ||| || |||| || |||| |||| ||| | || ||||| ||
Sbjct 2169 AACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGATTCCGATC 2110
Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180
|| ||||| | || || || ||||| | || || || | ||||||| |||
Sbjct 2109 AAGGAGACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCTTTGGTGACA 2050
Query 16181 ATATCTCTTA-CTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGC 16239
|| | | || ||| || || | || | | |||| || | | ||||||
Sbjct 2049 ATCTTCAAGATCTTCACCCGAGAA-GGTCGATTGACGATGTGTCGGAAAAGCAAACAAGC 1991
Query 16240 AAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTT--TGAAAATGTAAGACCT 16297
|||||||||||| | |||||| || | || || || || ||||| | ||| ||
Sbjct 1990 AAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGTC-AAG-CCA 1933
Query 16298 GGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATA 16357
||||| |||||||||||||||| |||||| ||||| ||||| || ||||| || || ||
Sbjct 1932 GGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAAAAGATT 1873
Query 16358 CCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT---TCTAtttttactttct 16414
||||| || || || || ||||| | || ||| | | | ||||| | ||
Sbjct 1872 CCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCATC---TTGA 1816
Query 16415 atccattttttagcccaatttgctttttgtttAACACAGTTCA-TGTTCTCTATTGCATT 16473
||||| | ||||||| || ||||| | | ||||| || |||| | || |||||
Sbjct 1815 GTCCATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTT-TGAATGGCATT 1757
Query 16474 AAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACAT 16533
|| | | ||| | | || | ||||| ||||| |||| || || || ||||||
Sbjct 1756 GAAAAGAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGAATACAT 1697
Query 16534 TTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATAT 16593
||| || |||||||| || || || |||||||| |||||||| |||| ||| || | |||
Sbjct 1696 TTCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGGTAT 1637
Query 16594 TTGTACTTCA-GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTG 16652
|| || ||| || | |||| | | |||| || || |||||||||||||| || || |
Sbjct 1636 CTGAACATCACGAATGAAACGCT-CAGCTAGATTCTCATTAACTATTCCATCACTTGCAG 1578
Query 16653 CAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGT 16712
|||| || || | | || || |||| |||||| | ||| | || ||| |||
Sbjct 1577 CAAAGAATGCTAACACATGAGAGATGAAATGTTTTTCAT--TCTTA----TTCAACGAGT 1524
Query 16713 CAGAAAAATCT--TTTG----ATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAG 16766
|| |||| | | ||||||||| ||||| || |||||||| || || | |
Sbjct 1523 TCCAATGATCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCG 1464
Query 16767 CCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACA 16816
| || || ||||| | ||| || |||| ||| ||| ||||||| ||||
Sbjct 1463 CTTTCTTGTACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACA 1414
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462402962796000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |