Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_002686.2
Length=124784
Score E
Sequences producing significant alignments: (Bits) Value
seq6148 143 2e-29
>seq6148
Length=42148
Score = 143 bits (158), Expect = 2e-29
Identities = 322/475 (68%), Gaps = 9/475 (2%)
Strand=Plus/Plus
Query 19921 GAATATCAATACTTGGAGCAAGTTAATTTTATTTTACACAATGGTGTACAAAAAACAGAT 19980
||| || |||| ||||| | | || || || | | || ||| | |||| | ||||
Sbjct 25160 GAACATGAATATTTGGATCTGATCAAACTTGTTCTCGAAAAAGGTATCGAAAAGAAAGAT 25219
Query 19981 CGAACCGGAACTGGAACGTTATC-TGTATTTGGAATGCAATCTCGATATAACTTGAGAAA 20039
|||||||| || ||| | || ||| ||||||| ||||| ||||| || | |
Sbjct 25220 CGAACCGGTGTAGGTACGATCTCATGT-TTTGGAACACAATCGAGATATTCATTACGGGA 25278
Query 20040 TGAA---TTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTT 20096
| || || || || || || || ||||| || || | |||| | |||||||| |
Sbjct 25279 TCAAACGTTGCCGTTGTTGACAACAAAACGTGTTTTCTATCGAGGCATCATTGAAGAGCT 25338
Query 20097 ATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGA-GTTAAGA 20155
| ||||| ||| || ||||| |||| | || ||| | |||||| | || || |
Sbjct 25339 TCTCTGGTTCATTCGTGGCTCAACTGATTCGAAAGAACTT-TCGAAAAAAAATGTCAAAA 25397
Query 20156 TTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAG 20215
| ||| |||| | || || | ||||| | | ||| || || | | |||
Sbjct 25398 TATGGGACGCAAACGGTTCGAGAGAATTTCTCGATTCTCTTGGCTTCAACGATAGAGAAG 25457
Query 20216 AGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTG 20275
| || ||| | || || || ||||| ||||||||| | ||||| || || ||||||||||
Sbjct 25458 AAGGAGATCTCGGACCAGTTTATGGCTTTCAATGGCGCCATTTCGGTGCAGAATATGTTG 25517
Query 20276 ACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTA-CAAAATGTTATTAATTTA 20334
||| |||| | ||||| |||||||| || |||||| || | |||| | || |
Sbjct 25518 ACAAGAACGCTGATTATGAGGGACAAGGTGTCGATCAACTATCTAAAT-TGATCGAAACT 25576
Query 20335 ATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAG 20389
||||| ||||| ||||| || | |||| ||||| || ||||||||||||||||
Sbjct 25577 ATTAAGACGAATCCAAATGATCGTCGAATGATTTTGTGTGCCTGGAACGCTAAAG 25631
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399092245062700
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |