Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq6148 143 2e-29 >seq6148 Length=42148 Score = 143 bits (158), Expect = 2e-29 Identities = 322/475 (68%), Gaps = 9/475 (2%) Strand=Plus/Plus Query 19921 GAATATCAATACTTGGAGCAAGTTAATTTTATTTTACACAATGGTGTACAAAAAACAGAT 19980 ||| || |||| ||||| | | || || || | | || ||| | |||| | |||| Sbjct 25160 GAACATGAATATTTGGATCTGATCAAACTTGTTCTCGAAAAAGGTATCGAAAAGAAAGAT 25219 Query 19981 CGAACCGGAACTGGAACGTTATC-TGTATTTGGAATGCAATCTCGATATAACTTGAGAAA 20039 |||||||| || ||| | || ||| ||||||| ||||| ||||| || | | Sbjct 25220 CGAACCGGTGTAGGTACGATCTCATGT-TTTGGAACACAATCGAGATATTCATTACGGGA 25278 Query 20040 TGAA---TTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTT 20096 | || || || || || || || ||||| || || | |||| | |||||||| | Sbjct 25279 TCAAACGTTGCCGTTGTTGACAACAAAACGTGTTTTCTATCGAGGCATCATTGAAGAGCT 25338 Query 20097 ATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGA-GTTAAGA 20155 | ||||| ||| || ||||| |||| | || ||| | |||||| | || || | Sbjct 25339 TCTCTGGTTCATTCGTGGCTCAACTGATTCGAAAGAACTT-TCGAAAAAAAATGTCAAAA 25397 Query 20156 TTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAG 20215 | ||| |||| | || || | ||||| | | ||| || || | | ||| Sbjct 25398 TATGGGACGCAAACGGTTCGAGAGAATTTCTCGATTCTCTTGGCTTCAACGATAGAGAAG 25457 Query 20216 AGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTG 20275 | || ||| | || || || ||||| ||||||||| | ||||| || || |||||||||| Sbjct 25458 AAGGAGATCTCGGACCAGTTTATGGCTTTCAATGGCGCCATTTCGGTGCAGAATATGTTG 25517 Query 20276 ACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTA-CAAAATGTTATTAATTTA 20334 ||| |||| | ||||| |||||||| || |||||| || | |||| | || | Sbjct 25518 ACAAGAACGCTGATTATGAGGGACAAGGTGTCGATCAACTATCTAAAT-TGATCGAAACT 25576 Query 20335 ATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAG 20389 ||||| ||||| ||||| || | |||| ||||| || |||||||||||||||| Sbjct 25577 ATTAAGACGAATCCAAATGATCGTCGAATGATTTTGTGTGCCTGGAACGCTAAAG 25631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399092245062700