Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq4298 217 1e-51 >seq4298 Length=5336 Score = 217 bits (240), Expect = 1e-51 Identities = 587/887 (66%), Gaps = 16/887 (2%) Strand=Plus/Minus Query 13911 TTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATAT 13970 ||||||||||||| ||| | |||||| || || ||||||||||| |||| || || | Sbjct 2288 TTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAAGAGATCT 2229 Query 13971 TTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATA 14030 |||||| ||| ||||||||| ||| | | | ||| || | | || || | | Sbjct 2228 GTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCCAGCTCGACCA 2169 Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090 || | ||| || | | || || || | | ||| ||| | ||| || || || | Sbjct 2168 ACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGATTCCGATCA 2109 Query 14091 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150 ||||| | | ||| |||||||||| || || || || | | | | || Sbjct 2108 AGGAGACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCTTTGGTGACAA 2049 Query 14151 TAATCGTAATAATTTCATT--AGAAGGAGGATATTTTAGATGTTTA--AAAATTAAACAC 14206 | || || | |||| |||||| ||| | ||||| | |||| ||||| Sbjct 2048 TCTTC--AAGATCTTCACCCGAGAAGGTCGAT--TGACGATGTGTCGGAAAAGCAAACAA 1993 Query 14207 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATC 14264 ||||||||||||||||| || ||||| | || | ||| || ||||| || || | Sbjct 1992 GCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAA--GTCAAGC 1935 Query 14265 CTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATA 14324 | ||||||| |||||||||||| | |||||| || || || || || || || || || | Sbjct 1934 CAGGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAAAAGA 1875 Query 14325 TTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGAT 14383 |||| || || ||||| ||||| | | ||||| |||| || | | | | || Sbjct 1874 TTCCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCATCTTGA- 1816 Query 14384 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14443 ||||| | ||||||||| | ||| || | | | || || ||||| ||| ||||| Sbjct 1815 GTCCATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGCATTG 1756 Query 14444 AATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14503 || | | || |||| | || | || || |||| || || || ||||||| Sbjct 1755 AAAAGAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGAATACATT 1696 Query 14504 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14563 |||||||| || ||||| || || |||||||| ||||||||||||| ||| |||| Sbjct 1695 TCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGGTATC 1636 Query 14564 TGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14622 || || || || | ||| | || || | ||| ||||||||||| |||||||| || || Sbjct 1635 TGAACATCACGAATGAAA-CGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGCAGC 1577 Query 14623 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATC 14682 ||| ||||| || | | || || | || || | || | | ||||||| Sbjct 1576 AAAGAATGCTAACACATGAGAGATGAAATGTTTTTCATTCTTATTCAACGAGTTCCAATG 1517 Query 14683 GGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTT 14742 ||| ||| | | ||| ||||| || ||||||||||| || | ||||| || Sbjct 1516 ATCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCTTTCTT 1457 Query 14743 ATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC 14789 ||||| |||| || ||||| ||| || ||||| | ||||||| Sbjct 1456 GTACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATC 1410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482231887024800