Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq4298 217 1e-51
>seq4298
Length=5336
Score = 217 bits (240), Expect = 1e-51
Identities = 587/887 (66%), Gaps = 16/887 (2%)
Strand=Plus/Minus
Query 13911 TTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATAT 13970
||||||||||||| ||| | |||||| || || ||||||||||| |||| || || |
Sbjct 2288 TTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAAGAGATCT 2229
Query 13971 TTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATA 14030
|||||| ||| ||||||||| ||| | | | ||| || | | || || | |
Sbjct 2228 GTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCCAGCTCGACCA 2169
Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090
|| | ||| || | | || || || | | ||| ||| | ||| || || || |
Sbjct 2168 ACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGATTCCGATCA 2109
Query 14091 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150
||||| | | ||| |||||||||| || || || || | | | | ||
Sbjct 2108 AGGAGACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCTTTGGTGACAA 2049
Query 14151 TAATCGTAATAATTTCATT--AGAAGGAGGATATTTTAGATGTTTA--AAAATTAAACAC 14206
| || || | |||| |||||| ||| | ||||| | |||| |||||
Sbjct 2048 TCTTC--AAGATCTTCACCCGAGAAGGTCGAT--TGACGATGTGTCGGAAAAGCAAACAA 1993
Query 14207 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATC 14264
||||||||||||||||| || ||||| | || | ||| || ||||| || || |
Sbjct 1992 GCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAA--GTCAAGC 1935
Query 14265 CTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATA 14324
| ||||||| |||||||||||| | |||||| || || || || || || || || || |
Sbjct 1934 CAGGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAAAAGA 1875
Query 14325 TTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGAT 14383
|||| || || ||||| ||||| | | ||||| |||| || | | | | ||
Sbjct 1874 TTCCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCATCTTGA- 1816
Query 14384 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14443
||||| | ||||||||| | ||| || | | | || || ||||| ||| |||||
Sbjct 1815 GTCCATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGCATTG 1756
Query 14444 AATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14503
|| | | || |||| | || | || || |||| || || || |||||||
Sbjct 1755 AAAAGAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGAATACATT 1696
Query 14504 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14563
|||||||| || ||||| || || |||||||| ||||||||||||| ||| ||||
Sbjct 1695 TCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGGTATC 1636
Query 14564 TGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14622
|| || || || | ||| | || || | ||| ||||||||||| |||||||| || ||
Sbjct 1635 TGAACATCACGAATGAAA-CGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGCAGC 1577
Query 14623 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATC 14682
||| ||||| || | | || || | || || | || | | |||||||
Sbjct 1576 AAAGAATGCTAACACATGAGAGATGAAATGTTTTTCATTCTTATTCAACGAGTTCCAATG 1517
Query 14683 GGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTT 14742
||| ||| | | ||| ||||| || ||||||||||| || | ||||| ||
Sbjct 1516 ATCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCTTTCTT 1457
Query 14743 ATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC 14789
||||| |||| || ||||| ||| || ||||| | |||||||
Sbjct 1456 GTACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATC 1410
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482231887024800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |