Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq135 116 3e-21
seq4581 86.0 5e-12
>seq135
Length=1279
Score = 116 bits (128), Expect = 3e-21
Identities = 154/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175
||||| ||| | || |||||||||||||| ||||| ||| || |||| ||| ||||||
Sbjct 869 TACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTCAATGTTCTACCATCTTC 810
Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235
|||||||||||| ||| | || | | ||||||||| || | ||||| |||||
Sbjct 809 CAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTG 750
Query 18236 AATTTGTTGCTT-GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294
||||| | |||| ||| | | ||| || || || || ||| | || ||| |||
Sbjct 749 AATTT-TAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTT 691
Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
| || ||||||||||| || ||||| |||||
Sbjct 690 TTCCAGTCAATGTTTTAACGAAAATCTGCAT 660
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176
|||| ||| | || ||||||||||| || || || ||| | ||| || |||||||
Sbjct 640 ACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCTTCC 581
Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236
||||||||||| ||| | || || | ||| ||||| || | ||||| ||||| |
Sbjct 580 AATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCTTGA 521
Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295
|||| | || ||||| | | ||| || || || || ||| | || ||| | ||
Sbjct 520 ATTT-TAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGTAATGGTCTT 462
Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| ||||| ||||| |||||||| |||||
Sbjct 461 TCCAGTCAAAGTTTTGACAAAAATCTGCAT 432
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| ||||| || | | |||| ||| | || ||||||||||| || || || |||
Sbjct 430 CCACCCCGGAGACGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGCTG 371
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| ||| || ||||||||||||||| || ||| | || | | ||||||||| ||
Sbjct 370 AGAGTTCGACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 311
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| ||||| || || |||| | || ||||| | | ||| ||| || || ||
Sbjct 310 ATACCTTCTTTGTCCTGTATTT-TAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAAC 252
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||| | ||||| |||| || ||||||||||| || ||||| |||||
Sbjct 251 TTCCAAAGTGATTGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204
>seq4581
Length=275
Score = 86.0 bits (94), Expect = 5e-12
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175
||||| || | ||||||||||| |||||||| || ||| || |||| ||| ||||||
Sbjct 138 TACCAAATGCAAAGTTGATTCTTTCTGAATGTTATAATCGCTCAATGTTCTACCATCTTC 197
Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232
|||||||||||| ||| | || || | ||| ||||| || | ||||| |||||
Sbjct 198 CAATTGTTTGCCAGCAAAAATTAGACGTTGCTGATCTGGAGGAATACCTTCTTTATC 254
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379256805410700
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |