Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq10223 522 3e-143 seq4298 345 5e-90 >seq10223 Length=44262 Score = 522 bits (578), Expect = 3e-143 Identities = 1206/1805 (67%), Gaps = 42/1805 (2%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || ||||| || || || ||||||||| | ||||| || || || ||||| | Sbjct 20290 ACCTGAAATTCGCCTGATAAAACTCTCCGATTATAAATGTTGGAAGTGTATGGTTCAAAT 20349 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 || ||||| ||||| || |||||||| || ||||| |||||||| || || || | | | Sbjct 20350 GATTCATTGTTTCCTAAGATTTGAGCTGTCGATGCGGTCGGCATCGGAGCAACTAGAAGA 20409 Query 62508 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCC 62567 ||||||| ||||||||| | || || ||||| | | |||||||| ||| ||||| Sbjct 20410 CTATTTCGTAGACCGTATTTAGCAATATTTTCTTTCAATTTTTCCCAATCCCAGAGATCG 20469 Query 62568 GACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACA 62627 | ||| | ||||| |||||||| || ||| |||||| || Sbjct 20470 GTAGGTTTGCGATCCCACATATCGTATTGGAGAATACCTTTCGATGCGGGAGATCCTTCA 20529 Query 62628 TATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAA 62687 || || ||||| ||||| | | |||||| || ||| || ||||||||||| |||||| Sbjct 20530 TAGGTTTCATAAGGTCCATGGATAGCAGCTAATTCACAGCTAGCCTCTAATGCTCCGTAA 20589 Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747 || || ||||| || || | |||| | | || ||||| || ||||| ||||| Sbjct 20590 TAGATTGTTTCGAAAATTTGTATATTCAATTTTTTCGCTTCATCACTTTCAAAAGGATA- 20648 Query 62748 TTTAAG-AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 62806 | |||| | ||| ||||| || |||| ||||| || || || || || ||||| |||| Sbjct 20649 TCTAAGCAAAATGAACGCATCAGCTAGACCTTGTACGCCGATTCCAATCGGTCTGTGTCG 20708 Query 62807 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 62866 | |||| || |||||| || | ||||||||||| | ||| || ||||| || | Sbjct 20709 CATATTTGAACGACGAGCTTCCGGCAAGGGATAATAATTTACATCAATTATTTTGTTCAA 20768 Query 62867 ATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTAT 62926 |||| | || ||||||| | | |||| | |||||| | || | | Sbjct 20769 ATTTTTCGTCATAACTTTGATGATGTTTTTCAACTCTCCAAAATCGTAGGATAGATTTTT 20828 Query 62927 T------ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCAT-TAG 62979 | ||||| | || ||||| || || |||||||| || |||| || | | | Sbjct 20829 TTGATTGACAAATTTTGGTAACGCAACCGAAGCTAGATTACAAACAGCTATTTCGTCTGG 20888 Query 62980 C-ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTT 63038 | || | ||||| | ||||| |||||||||||| || ||||| || || | |||| Sbjct 20889 CGAT--GAATATTCAACAATCTCGGTGCAAAGATTAGAGCATTTGATGGTGCCAAGATTT 20946 Query 63039 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 63098 | ||||||| ||| | ||||| ||| || || | |||||||| || || ||||| Sbjct 20947 TTTTGATTAGATTTTCTATTACAATGATCTTTGTAGACCATGAATGGTGTTCCGGTTTCC 21006 Query 63099 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCC----TTTATTATAGATTTGTA 63154 | ||||| || | || || ||| | | ||||| ||| || ||| | | Sbjct 21007 ACCTGAGCATCGACTATTGCGAACCAAAGTTCACGAGCTGGAATTTGTTTGCGATATCGA 21066 Query 63155 TCTCCTTTCTC---TTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATT 63211 | ||||||| |||| |||||| | | |||||| || || |||||||||| Sbjct 21067 TTCTCTTTCTCATATTTCTCATAGAG------AGC-TTCGAATTCTTCGCCCCAAACATC 21119 Query 63212 GTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACT-C 63270 | ||||| ||||||||| | || |||||||||||||| | || || ||| | | Sbjct 21120 TTGCAATCCAGGACATTCTTTGGGGCACATCAACGACCAAACCCCATCGGT-TTCGCAAC 21178 Query 63271 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCC 63329 ||||||| || | ||| || ||||| | || ||| || |||||||| | | ||| Sbjct 21179 GTTTCATGAACAAATCCGGTATCCATAATGC-ATAGAAAAGATCTCTGGCACGTAATTCT 21237 Query 63330 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 63389 || || ||||| ||| | || | || | | |||||| | ||||||||||||| Sbjct 21238 TCTGAGCCAGTATTTCGTTTCAAATTTAAAAAGTCGAAAATATCTGCATGCCACGGTTCC 21297 Query 63390 AAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 63449 || ||||| || | | | ||||| || || || || || ||||| | || | |||||| Sbjct 21298 AAATATATTGCGAAAGCACCAGGACGCTTATTACCACCTTGATCGACATAACGAGCGGTA 21357 Query 63450 TTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATA 63509 | || ||||||| |||||| |||| | ||| ||||| ||| ||||| || || Sbjct 21358 TCGTTGTAAACTCGCAACATCGGAACCAAACCATTTGAATGACCTTTGGTGCCAACTATG 21417 Query 63510 TAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 63569 || |||| | || |||||| | || ||||| || || || || || || Sbjct 21418 TACGATCCATTTGCTCGAATACAATGAACATTAAGACCGATGCCACCGGCTGACTTCGAT 21477 Query 63570 ATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTA 63629 || | || ||| |||| ||||| || || || ||||| || ||||||||| ||| | Sbjct 21478 ATAATAGCACATTGTTTCAACGTATCGTAAATACCTTCAATACTATCATCGGCCATCGTC 21537 Query 63630 AGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAA 63689 | || |||||| ||||||||| || | || || || | |||||| || ||||| || Sbjct 21538 AATAAAAAACATGAAGACATTTGAGGATGGGTTGTACCAGAATTAAACAAAGTAGGTGAG 21597 Query 63690 GCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC 63749 ||||| ||||| || ||| | |||||| |||||||| || || || || ||||| Sbjct 21598 GCGTGTGTAAAAAGACCTTTAGACATTAGATTATACGTCTCGATGGCCGAATCAATATCT 21657 Query 63750 CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTG 63809 || ||| || || | ||||| | ||| ||||| ||||| |||||||| |||| ||| Sbjct 21658 TCTTTATGTATACCGATGGCGACTCTCATCAACATATGCTGTGGTCTTTCGACAACTTTC 21717 Query 63810 TTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 63869 || | | || | ||| | | || ||||| ||||||||||| ||||| | Sbjct 21718 CCATTCACTCGTAATAGATAGCTTCGTAATAAGGTTTTGAAACCAAAATAATTGTAACTA 21777 Query 63870 AAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCC 63929 || ||||| || ||||| || | |||||||| ||| | | |||| | || | Sbjct 21778 AAATCTCGATCATAAATTATCGCTGAATTGAGACGATC---AGA---GTTATCCATTACG 21831 Query 63930 ATGGTA-ATACTT-----GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAG 63983 || || | || | | ||||||||| | ||| || |||| || ||||| Sbjct 21832 ATTTTATAAACATCATCGGCGATAATCGGAATAGATTTGCCTGTTTTCTCATCGACATAA 21891 Query 63984 TTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGAT 64043 ||| | | ||| | || || || || ||| || || || || |||||||| || Sbjct 21892 TTGTAGAGATCATGAATGACATCTGAGAAATTTTTCTTCGTCTCTTTTTGTAGATTAGAA 21951 Query 64044 ATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCT 64103 || | |||| || || |||| |||||||| | ||||||||| || || || || Sbjct 21952 ATAGAGATTCGAGCAGCGAGAACAGCATAATCGGTATGTTGTGTTGTCATCGTAGCAGCG 22011 Query 64104 ATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATA 64163 || || || || || ||||||| || ||||| || ||| ||| || || | || Sbjct 22012 ATCTCCGCAGCTAGCTCATCCAATTGGACTGTTGTAACGCCAGAATAGATACCATTGATG 22071 Query 64164 ACCTT 64168 ||||| Sbjct 22072 ACCTT 22076 Score = 122 bits (134), Expect = 1e-22 Identities = 175/247 (71%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 || |||| ||||||||||||| | || || ||| | ||||||||||| ||||||||| Sbjct 19863 TTATCCACAGTGAATTGAATGGCATTGGCCGCTGGTCTAGTACGTAGATAATACATTCCC 19922 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 ||||| | ||| | ||| | || |||||||| || | ||||| | | | Sbjct 19923 GTTTTCAAACCATTTCGCCAGCAATAGAAATGCATCGATGTCATTTTGGCCATAGTAGCC 19982 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 || || ||||| ||||||| ||||||||||||||||||||| || || | ||| ||||| Sbjct 19983 TCAGCGATATGAATATTCAAAGATTGACTTTGATCGATGAACGCACCACGATCTACAGCC 20042 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 62276 || | || | || || | || ||||||| || || || | | ||||| ||| Sbjct 20043 ATCTCACAAATTCTTTTCTGAGGGATCTCCCAAACGGTCTTGTAGAGTGCTTTAATTTCT 20102 Query 62277 TCTGGAA 62283 | ||||| Sbjct 20103 TTTGGAA 20109 >seq4298 Length=5336 Score = 345 bits (382), Expect = 5e-90 Identities = 620/901 (69%), Gaps = 25/901 (3%) Strand=Plus/Minus Query 33289 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATAT 33348 ||||||| ||||| | |||||||||||||||||||||||||| || ||||| || || | Sbjct 2288 TTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAAGAGATCT 2229 Query 33349 TTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAA 33408 |||||||||| || ||||| | |||||||| ||| || ||| || | Sbjct 2228 GTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCCAGCTCGACCA 2169 Query 33409 TCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGA 33468 ||| | ||| ||| | |||| || || |||||| | ||| ||||| || | Sbjct 2168 ACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGATTCCGATCA 2109 Query 33469 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528 || || | || | || | ||||||||| ||||| ||||| || || | || Sbjct 2108 AGGAGACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCTTTGGTGACAA 2049 Query 33529 TAAATCTAACGGTTTCTTCACTCG-----GTGGATGTAATAAATGTTTAAACATCAAACA 33583 | | | | | |||||| || || ||| | | ||| || | |||||| Sbjct 2048 TCT---TCAAGAT--CTTCACCCGAGAAGGTCGATTGACGATGTGTCGGAAAAGCAAACA 1994 Query 33584 TGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCC 33643 || ||||| || || || || || || | || ||||| ||| || || | || Sbjct 1993 AGCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGTCAAGCC 1934 Query 33644 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGAT 33703 ||||| || || || |||||||||||||| || | || || || || || || ||||| Sbjct 1933 AGGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAAAAGAT 1874 Query 33704 TCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTA---T 33760 |||||| || ||||| || |||| ||| | || || | | | || |||| | | Sbjct 1873 TCCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCATCTTGAGT 1814 Query 33761 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820 ||| | |||||| | || ||||| | |||||||||| |||| |||||||| || Sbjct 1813 CCATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGCATTGAA 1754 Query 33821 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACATT 33878 ||| | | | | |||| ||||||| | ||| |||| ||| | || || ||||||| Sbjct 1753 AAGAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGA--ATACATT 1696 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 || || ||||| ||||| ||||| ||||||||||| || ||||||| |||||| | ||| Sbjct 1695 TCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGGTATC 1636 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 || || || | || || || |||| ||| ||||| |||||||||||||| || ||| Sbjct 1635 TGAACATCACGAATGAAACGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGCAGCA 1576 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA----TTCCA 34054 || || || || ||||| || |||| |||||| | | ||| | | ||||| Sbjct 1575 AAGAATGCTAACACATGAGAGATGAAATGTTTTTCAT----TCTTATTCAACGAGTTCCA 1520 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 || || | ||| | || ||| |||||||| ||||||||||| |||||||| || || Sbjct 1519 ATGATCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCTTT 1460 Query 34115 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 || ||||| | |||||| || | ||||| ||||| || | |||||||| ||| ||||| Sbjct 1459 CTTGTACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATCGATTCGGATT 1400 Query 34175 T 34175 | Sbjct 1399 T 1399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629669120500800