Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq10223 522 3e-143
seq4298 345 5e-90
>seq10223
Length=44262
Score = 522 bits (578), Expect = 3e-143
Identities = 1206/1805 (67%), Gaps = 42/1805 (2%)
Strand=Plus/Plus
Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447
|| || ||||| || || || ||||||||| | ||||| || || || ||||| |
Sbjct 20290 ACCTGAAATTCGCCTGATAAAACTCTCCGATTATAAATGTTGGAAGTGTATGGTTCAAAT 20349
Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507
|| ||||| ||||| || |||||||| || ||||| |||||||| || || || | | |
Sbjct 20350 GATTCATTGTTTCCTAAGATTTGAGCTGTCGATGCGGTCGGCATCGGAGCAACTAGAAGA 20409
Query 62508 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCC 62567
||||||| ||||||||| | || || ||||| | | |||||||| ||| |||||
Sbjct 20410 CTATTTCGTAGACCGTATTTAGCAATATTTTCTTTCAATTTTTCCCAATCCCAGAGATCG 20469
Query 62568 GACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACA 62627
| ||| | ||||| |||||||| || ||| |||||| ||
Sbjct 20470 GTAGGTTTGCGATCCCACATATCGTATTGGAGAATACCTTTCGATGCGGGAGATCCTTCA 20529
Query 62628 TATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAA 62687
|| || ||||| ||||| | | |||||| || ||| || ||||||||||| ||||||
Sbjct 20530 TAGGTTTCATAAGGTCCATGGATAGCAGCTAATTCACAGCTAGCCTCTAATGCTCCGTAA 20589
Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747
|| || ||||| || || | |||| | | || ||||| || ||||| |||||
Sbjct 20590 TAGATTGTTTCGAAAATTTGTATATTCAATTTTTTCGCTTCATCACTTTCAAAAGGATA- 20648
Query 62748 TTTAAG-AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 62806
| |||| | ||| ||||| || |||| ||||| || || || || || ||||| ||||
Sbjct 20649 TCTAAGCAAAATGAACGCATCAGCTAGACCTTGTACGCCGATTCCAATCGGTCTGTGTCG 20708
Query 62807 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 62866
| |||| || |||||| || | ||||||||||| | ||| || ||||| || |
Sbjct 20709 CATATTTGAACGACGAGCTTCCGGCAAGGGATAATAATTTACATCAATTATTTTGTTCAA 20768
Query 62867 ATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTAT 62926
|||| | || ||||||| | | |||| | |||||| | || | |
Sbjct 20769 ATTTTTCGTCATAACTTTGATGATGTTTTTCAACTCTCCAAAATCGTAGGATAGATTTTT 20828
Query 62927 T------ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCAT-TAG 62979
| ||||| | || ||||| || || |||||||| || |||| || | | |
Sbjct 20829 TTGATTGACAAATTTTGGTAACGCAACCGAAGCTAGATTACAAACAGCTATTTCGTCTGG 20888
Query 62980 C-ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTT 63038
| || | ||||| | ||||| |||||||||||| || ||||| || || | ||||
Sbjct 20889 CGAT--GAATATTCAACAATCTCGGTGCAAAGATTAGAGCATTTGATGGTGCCAAGATTT 20946
Query 63039 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 63098
| ||||||| ||| | ||||| ||| || || | |||||||| || || |||||
Sbjct 20947 TTTTGATTAGATTTTCTATTACAATGATCTTTGTAGACCATGAATGGTGTTCCGGTTTCC 21006
Query 63099 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCC----TTTATTATAGATTTGTA 63154
| ||||| || | || || ||| | | ||||| ||| || ||| | |
Sbjct 21007 ACCTGAGCATCGACTATTGCGAACCAAAGTTCACGAGCTGGAATTTGTTTGCGATATCGA 21066
Query 63155 TCTCCTTTCTC---TTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATT 63211
| ||||||| |||| |||||| | | |||||| || || ||||||||||
Sbjct 21067 TTCTCTTTCTCATATTTCTCATAGAG------AGC-TTCGAATTCTTCGCCCCAAACATC 21119
Query 63212 GTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACT-C 63270
| ||||| ||||||||| | || |||||||||||||| | || || ||| | |
Sbjct 21120 TTGCAATCCAGGACATTCTTTGGGGCACATCAACGACCAAACCCCATCGGT-TTCGCAAC 21178
Query 63271 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCC 63329
||||||| || | ||| || ||||| | || ||| || |||||||| | | |||
Sbjct 21179 GTTTCATGAACAAATCCGGTATCCATAATGC-ATAGAAAAGATCTCTGGCACGTAATTCT 21237
Query 63330 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 63389
|| || ||||| ||| | || | || | | |||||| | |||||||||||||
Sbjct 21238 TCTGAGCCAGTATTTCGTTTCAAATTTAAAAAGTCGAAAATATCTGCATGCCACGGTTCC 21297
Query 63390 AAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 63449
|| ||||| || | | | ||||| || || || || || ||||| | || | ||||||
Sbjct 21298 AAATATATTGCGAAAGCACCAGGACGCTTATTACCACCTTGATCGACATAACGAGCGGTA 21357
Query 63450 TTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATA 63509
| || ||||||| |||||| |||| | ||| ||||| ||| ||||| || ||
Sbjct 21358 TCGTTGTAAACTCGCAACATCGGAACCAAACCATTTGAATGACCTTTGGTGCCAACTATG 21417
Query 63510 TAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 63569
|| |||| | || |||||| | || ||||| || || || || || ||
Sbjct 21418 TACGATCCATTTGCTCGAATACAATGAACATTAAGACCGATGCCACCGGCTGACTTCGAT 21477
Query 63570 ATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTA 63629
|| | || ||| |||| ||||| || || || ||||| || ||||||||| ||| |
Sbjct 21478 ATAATAGCACATTGTTTCAACGTATCGTAAATACCTTCAATACTATCATCGGCCATCGTC 21537
Query 63630 AGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAA 63689
| || |||||| ||||||||| || | || || || | |||||| || ||||| ||
Sbjct 21538 AATAAAAAACATGAAGACATTTGAGGATGGGTTGTACCAGAATTAAACAAAGTAGGTGAG 21597
Query 63690 GCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC 63749
||||| ||||| || ||| | |||||| |||||||| || || || || |||||
Sbjct 21598 GCGTGTGTAAAAAGACCTTTAGACATTAGATTATACGTCTCGATGGCCGAATCAATATCT 21657
Query 63750 CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTG 63809
|| ||| || || | ||||| | ||| ||||| ||||| |||||||| |||| |||
Sbjct 21658 TCTTTATGTATACCGATGGCGACTCTCATCAACATATGCTGTGGTCTTTCGACAACTTTC 21717
Query 63810 TTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 63869
|| | | || | ||| | | || ||||| ||||||||||| ||||| |
Sbjct 21718 CCATTCACTCGTAATAGATAGCTTCGTAATAAGGTTTTGAAACCAAAATAATTGTAACTA 21777
Query 63870 AAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCC 63929
|| ||||| || ||||| || | |||||||| ||| | | |||| | || |
Sbjct 21778 AAATCTCGATCATAAATTATCGCTGAATTGAGACGATC---AGA---GTTATCCATTACG 21831
Query 63930 ATGGTA-ATACTT-----GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAG 63983
|| || | || | | ||||||||| | ||| || |||| || |||||
Sbjct 21832 ATTTTATAAACATCATCGGCGATAATCGGAATAGATTTGCCTGTTTTCTCATCGACATAA 21891
Query 63984 TTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGAT 64043
||| | | ||| | || || || || ||| || || || || |||||||| ||
Sbjct 21892 TTGTAGAGATCATGAATGACATCTGAGAAATTTTTCTTCGTCTCTTTTTGTAGATTAGAA 21951
Query 64044 ATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCT 64103
|| | |||| || || |||| |||||||| | ||||||||| || || || ||
Sbjct 21952 ATAGAGATTCGAGCAGCGAGAACAGCATAATCGGTATGTTGTGTTGTCATCGTAGCAGCG 22011
Query 64104 ATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATA 64163
|| || || || || ||||||| || ||||| || ||| ||| || || | ||
Sbjct 22012 ATCTCCGCAGCTAGCTCATCCAATTGGACTGTTGTAACGCCAGAATAGATACCATTGATG 22071
Query 64164 ACCTT 64168
|||||
Sbjct 22072 ACCTT 22076
Score = 122 bits (134), Expect = 1e-22
Identities = 175/247 (71%), Gaps = 0/247 (0%)
Strand=Plus/Plus
Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096
|| |||| ||||||||||||| | || || ||| | ||||||||||| |||||||||
Sbjct 19863 TTATCCACAGTGAATTGAATGGCATTGGCCGCTGGTCTAGTACGTAGATAATACATTCCC 19922
Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156
||||| | ||| | ||| | || |||||||| || | ||||| | | |
Sbjct 19923 GTTTTCAAACCATTTCGCCAGCAATAGAAATGCATCGATGTCATTTTGGCCATAGTAGCC 19982
Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216
|| || ||||| ||||||| ||||||||||||||||||||| || || | ||| |||||
Sbjct 19983 TCAGCGATATGAATATTCAAAGATTGACTTTGATCGATGAACGCACCACGATCTACAGCC 20042
Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 62276
|| | || | || || | || ||||||| || || || | | ||||| |||
Sbjct 20043 ATCTCACAAATTCTTTTCTGAGGGATCTCCCAAACGGTCTTGTAGAGTGCTTTAATTTCT 20102
Query 62277 TCTGGAA 62283
| |||||
Sbjct 20103 TTTGGAA 20109
>seq4298
Length=5336
Score = 345 bits (382), Expect = 5e-90
Identities = 620/901 (69%), Gaps = 25/901 (3%)
Strand=Plus/Minus
Query 33289 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATAT 33348
||||||| ||||| | |||||||||||||||||||||||||| || ||||| || || |
Sbjct 2288 TTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAAGAGATCT 2229
Query 33349 TTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAA 33408
|||||||||| || ||||| | |||||||| ||| || ||| || |
Sbjct 2228 GTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCCAGCTCGACCA 2169
Query 33409 TCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGA 33468
||| | ||| ||| | |||| || || |||||| | ||| ||||| || |
Sbjct 2168 ACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGATTCCGATCA 2109
Query 33469 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528
|| || | || | || | ||||||||| ||||| ||||| || || | ||
Sbjct 2108 AGGAGACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCTTTGGTGACAA 2049
Query 33529 TAAATCTAACGGTTTCTTCACTCG-----GTGGATGTAATAAATGTTTAAACATCAAACA 33583
| | | | | |||||| || || ||| | | ||| || | ||||||
Sbjct 2048 TCT---TCAAGAT--CTTCACCCGAGAAGGTCGATTGACGATGTGTCGGAAAAGCAAACA 1994
Query 33584 TGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCC 33643
|| ||||| || || || || || || | || ||||| ||| || || | ||
Sbjct 1993 AGCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGTCAAGCC 1934
Query 33644 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGAT 33703
||||| || || || |||||||||||||| || | || || || || || || |||||
Sbjct 1933 AGGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAAAAGAT 1874
Query 33704 TCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTA---T 33760
|||||| || ||||| || |||| ||| | || || | | | || |||| | |
Sbjct 1873 TCCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCATCTTGAGT 1814
Query 33761 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820
||| | |||||| | || ||||| | |||||||||| |||| |||||||| ||
Sbjct 1813 CCATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGCATTGAA 1754
Query 33821 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACATT 33878
||| | | | | |||| ||||||| | ||| |||| ||| | || || |||||||
Sbjct 1753 AAGAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGA--ATACATT 1696
Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938
|| || ||||| ||||| ||||| ||||||||||| || ||||||| |||||| | |||
Sbjct 1695 TCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGGTATC 1636
Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998
|| || || | || || || |||| ||| ||||| |||||||||||||| || |||
Sbjct 1635 TGAACATCACGAATGAAACGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGCAGCA 1576
Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA----TTCCA 34054
|| || || || ||||| || |||| |||||| | | ||| | | |||||
Sbjct 1575 AAGAATGCTAACACATGAGAGATGAAATGTTTTTCAT----TCTTATTCAACGAGTTCCA 1520
Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114
|| || | ||| | || ||| |||||||| ||||||||||| |||||||| || ||
Sbjct 1519 ATGATCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCTTT 1460
Query 34115 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174
|| ||||| | |||||| || | ||||| ||||| || | |||||||| ||| |||||
Sbjct 1459 CTTGTACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATCGATTCGGATT 1400
Query 34175 T 34175
|
Sbjct 1399 T 1399
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629669120500800
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