Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq10223 416 3e-111
seq4298 255 5e-63
>seq10223
Length=44262
Score = 416 bits (460), Expect = 3e-111
Identities = 1013/1515 (67%), Gaps = 30/1515 (2%)
Strand=Plus/Plus
Query 37137 AACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAAT 37196
||||||||| || || ||||| ||||| | |||| || ||| ||| ||||||||||
Sbjct 20289 AACCTGAAATTCGCCTGATAAAACTCTCCGATTATAAATGTTGGAAGTGTATGGTTCAAA 20348
Query 37197 GGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAG 37256
|| ||||| || | ||| ||||||| ||| ||||| || ||||| || || | ||||||
Sbjct 20349 TGATTCATTGTTTCCTAAGATTTGAGCTGTCGATGCGGTCGGCATCGGAGCAACTAGAAG 20408
Query 37257 GCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATC 37316
||||||| | || | | || ||| | | ||| | || | ||||||||| | |||
Sbjct 20409 ACTATTTCGTAGACCGTATTTAGCAATATTTTCTTTCAATTTTTCCCAATCCCAGAGATC 20468
Query 37317 TGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTT 37376
|| || || ||||||||| ||||| ||||||||||| || ||||| | |
Sbjct 20469 GGTAGGTTTGCGATCCCACATATCGTATTGGAGAATACCTTTCGATGCGGGAGATCCTTC 20528
Query 37377 ATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATA 37436
||| || ||||||||||| | || ||||| ||| || |||| |||| ||| | ||
Sbjct 20529 ATAGGTTTCATAAGGTCCATGGATAGCAGCTAATTCACAGCTAGCCTCTAATGCTCCGTA 20588
Query 37437 ATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATA 37496
||| ||||||||||||||||||||||| ||| |||| ||||| || || || || | |||
Sbjct 20589 ATAGATTGTTTCGAAAATTTGTATATTCAATTTTTTCGCTTCATCACTTTCAAAAGGATA 20648
Query 37497 GCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTT 37556
| | || || ||| ||||||| | ||| || || ||||| || || ||||| |||
Sbjct 20649 TCTAAGCAAAATGAACGCATCAGCTAGACCTTGTACGCCGATTCCAATCGGTCTGTGTCG 20708
Query 37557 CTTATTAGATCTAGACGA--TTCTATCACTGGATAATAATTGATATCTATTATTTTATTT 37614
| |||| || | ||||| ||| || ||||||||||| | ||| |||||||| ||
Sbjct 20709 CATATTTGAAC--GACGAGCTTCCGGCAAGGGATAATAATTTACATCAATTATTTTGTTC 20766
Query 37615 AGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA--CATA-AATACGTTA 37671
| |||||| | | ||| | || || |||||| | || | || ||| ||
Sbjct 20767 AAATTTTTCGTCATAACTTTGATGATGTTTTTCAACTCTCCAAAATCGTAGGATAGATTT 20826
Query 37672 TT---ATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCT 37728
|| ||| |||||||| |||| || || |||||||||| ||||| | ||| |||
Sbjct 20827 TTTTGATTGACAAATTTTGGTAACGCAACCGAAGCTAGATTACAAACAGCTATTTCGTCT 20886
Query 37729 -TCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATT 37787
|| | | ||| | |||||| || || |||||| || | || || || | |||
Sbjct 20887 GGCGAT-GAATATTCAACAATCTCGGTGCAAAGATTAGAGCATTTGATGGTGCCAAGATT 20945
Query 37788 GCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTC 37847
||||||| |||||| |||||||| |||||| || | || | || ||||| |||
Sbjct 20946 TTTTTGATTAGATTTTCTATTACAATGATCTTTGTAGACCATGAATGGTGTTCCGGTTTC 21005
Query 37848 TATTTGAGCCTCGATAATAGATTTCCATAAACTT--CTTGCTTTAA--CGATCGCTTTAA 37903
| ||||| |||| || | || ||| || | ||| || | | || ||
Sbjct 21006 CACCTGAGCATCGACTATTGCGAACC--AAAGTTCACGAGCTGGAATTTGTTTGCGATA- 21062
Query 37904 tttttttCTTTGTTTCGTA-TTCT-ATATATAATTTGTTAAAATCATTCCCCCATACATC 37961
| |||| | | || || |||| ||| | | | | || || | ||||| |||||
Sbjct 21063 -TCGATTCTCTTTCTCATATTTCTCATAGAGAGCT--TCGAATTCTTCGCCCCAAACATC 21119
Query 37962 GCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCG 38021
||||| |||||||| || ||||| | ||||| | |||| |||| ||
Sbjct 21120 TTGCAATCCAGGACATTCTTTGGGGCACATCAACGACCAAACCCCATCGGTTTCGCAACG 21179
Query 38022 TTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTC 38081
|| ||| || ||||| |||| |||||||||| || | |||| ||| | |||||||
Sbjct 21180 TTTCATGAACAAATCCGGTATCCATAATGCATAGAAAAGATCTCTGGCACGTAATTCTTC 21239
Query 38082 GTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTAT 38141
|| ||| | | || ||| ||| ||||| ||||| || ||||| ||||| |
Sbjct 21240 TGAGCCAGTATTTCGTTTCAAATTTAAAAAGTCGAAAATATCTGCATGCCACGGTTCCAA 21299
Query 38142 ATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTT 38201
||| || | | || || || | |||| ||| || |||| | ||| | | | || |
Sbjct 21300 ATATATTGCGAAAGCACCAGGACGCTTATTACCACCTTGATCGACATAACGAGCGGTATC 21359
Query 38202 ATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATA 38261
|| || | || ||||| || || | |||||| || | || || | || ||| ||
Sbjct 21360 GTTGTAAACTCGCAACATCGGAACCAAACCATTTGAATGACCTTTGGTGCCAACTATGTA 21419
Query 38262 AGTACCCTTAGCTCGTATATTACTTATCGACAA-TCCTATTCCACCTGCATGTTTTGATA 38320
| || || ||||| ||| | | | | || || || ||||| || || ||||
Sbjct 21420 CGATCCATTTGCTCGAATA-CAATGAACATTAAGACCGATGCCACCGGCTGACTTCGATA 21478
Query 38321 TTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTA 38380
| | ||| |||||||| |||||||| | |||||||| ||||| ||||| || | |
Sbjct 21479 TAATAGCACATTGTTTCAACGTATCGTAAATACCTTCAATACTATCATCGGCCATCGTCA 21538
Query 38381 GTATAAAACAACTAGACATTTGAGGCAATGG--AGTTCCGGCGTTAAATAATGTAGGAGA 38438
|| |||||| |||||||||||| |||| || || | ||||| || ||||| ||
Sbjct 21539 ATAAAAAACATGAAGACATTTGAGG--ATGGGTTGTACCAGAATTAAACAAAGTAGGTGA 21596
Query 38439 TGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATC 38498
|| ||| | || || |||| |||||| || || || | ||| |||||
Sbjct 21597 GGCGTGTGTAAAAAGACCTTTAGACATTAGATTATACGTCTCGATGGCCGAATCAATATC 21656
Query 38499 ACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT 38558
| || ||||| | | || ||||| | |||||| ||||||||||| | | |||
Sbjct 21657 TTCTTTATGTATACCGATGGCGACTCTCATCAACATATGCTGTGGTCTTTCGACAACTTT 21716
Query 38559 ATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGA 38618
|||| | | |||||| | | ||| ||||| | ||||||||| | ||
Sbjct 21717 CCCATTCACTCGTAATAGATAGCTTCGTAATAAGGTTTTGAAACCAAAATAATTGTAACT 21776
Query 38619 ATAATCTCTATCGTA 38633
| |||||| ||| ||
Sbjct 21777 AAAATCTCGATCATA 21791
Score = 96.9 bits (106), Expect = 3e-15
Identities = 184/269 (68%), Gaps = 3/269 (1%)
Strand=Plus/Plus
Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849
|| || ||||||| || | ||| | || | | | || | | |||||||||||| |||
Sbjct 19866 TCCACAGTGAATTGAATGGCATTGGCCGCTGGTCTAGTACGTAGATAATACATTCCCGTT 19925
Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909
|| | || || ||| | || |||||||| |||| ||| || |||| | |
Sbjct 19926 TTCAAACCATTTCGCCAGCAATAGAAATGCATCGATGTCATTTTGGCCATAGTAGCCTCA 19985
Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969
| |||| || ||| |||||||||||||| || |||||||| | || | |||||
Sbjct 19986 GCGATATGAATATTCAAAGATTGACTTTGATCGATGAACGCACCACGATCTACAGCCATC 20045
Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029
|| |||| | ||| |||| ||||||||||| || || || | | ||| || | | |
Sbjct 20046 TCACAAATTCTTTTCTGAGGGATCTCCCAAACGGTCTTGTAGAGTGCTTTAATTTCTTTT 20105
Query 37030 GG--TAA-ATCTAAATGTTGAATAGAACC 37055
|| ||| ||| | || ||| ||||||||
Sbjct 20106 GGAATAATATCAATATTTTGTATAGAACC 20134
>seq4298
Length=5336
Score = 255 bits (282), Expect = 5e-63
Identities = 592/881 (67%), Gaps = 15/881 (2%)
Strand=Plus/Minus
Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398
||||||||||| ||| ||| ||||||||||||||| ||||| || | || || |
Sbjct 2286 TTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAAGAGATCTGT 2227
Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458
||||| || || ||||| | | |||| | | ||| || | | | ||| ||
Sbjct 2226 TCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCCAGCTCGACCAAC 2167
Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518
|| | ||| ||| | |||| || |||| | ||| ||| | ||| || || || |
Sbjct 2166 AAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGATTCCGATCAAG 2107
Query 11519 TCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATC 11578
|| || | || | |||||||| || | || || | ||||| | ||| |||
Sbjct 2106 GAGACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCTTTGGTGACAATC 2047
Query 11579 GACGTTATAACTTC--CTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAA 11636
| || |||| | ||| ||| ||| | | ||| || | ||||| ||||
Sbjct 2046 TTCAAGAT--CTTCACCCGAGAAGGTCGATTGACGATGTGTCGGAAAAGCAAACAAGCAA 1989
Query 11637 AATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCA 11696
|||||||||| | ||||| || | || | ||||||| || || || || ||||
Sbjct 1988 AATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGTCAAGCCAGGCA 1929
Query 11697 TCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCT 11756
||| |||||||||||| | |||||| ||||| ||||| || ||||| || || ||||| |
Sbjct 1928 TCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAAAAGATTCCTT 1869
Query 11757 CCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTG--CTAGATATCCAT 11812
| || || || || || || | | ||| || | || || | || || |||||
Sbjct 1868 CGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCATCTTGAG-TCCAT 1810
Query 11813 TTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAA 11872
| | ||||| | |||||||| | || || || ||||| || || || || | |
Sbjct 1809 CTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGCATTGAAAAGA 1750
Query 11873 TGCATTTTTTCT-ATATT-ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTG 11930
| | | ||| ||||| |||| ||| ||| |||| || | || ||||||||| |
Sbjct 1749 A--AATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGAATACATTTCAG 1692
Query 11931 AATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTA 11990
| ||||||||||| || || || ||||||||||| |||||||| ||||||| ||| |
Sbjct 1691 AGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGGTATCTGAA 1632
Query 11991 CATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAA 12049
|||| | || ||| | || |||| ||||||||| || || |||||||| | |||||
Sbjct 1631 CATCACGAATGAAA-CGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGCAGCAAAG 1573
Query 12050 AATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCT 12109
||||||| | ||| || || | |||||| | ||| | || | ||||| ||||
Sbjct 1572 AATGCTAACACATGAGAGATGAAATGTTTTTCATTCTTATTCAACGAGTTCCAATGATCT 1513
Query 12110 AAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATAC 12169
| ||| |||||| |||||||| || |||||||| |||| | | || || |||
Sbjct 1512 AGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCTTTCTTGTAC 1453
Query 12170 ATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210
|| | ||||||||| | || | ||| || || | ||| ||
Sbjct 1452 ATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAA 1412
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468414345278400
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