Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq10223 416 3e-111 seq4298 255 5e-63 >seq10223 Length=44262 Score = 416 bits (460), Expect = 3e-111 Identities = 1013/1515 (67%), Gaps = 30/1515 (2%) Strand=Plus/Plus Query 37137 AACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAAT 37196 ||||||||| || || ||||| ||||| | |||| || ||| ||| |||||||||| Sbjct 20289 AACCTGAAATTCGCCTGATAAAACTCTCCGATTATAAATGTTGGAAGTGTATGGTTCAAA 20348 Query 37197 GGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAG 37256 || ||||| || | ||| ||||||| ||| ||||| || ||||| || || | |||||| Sbjct 20349 TGATTCATTGTTTCCTAAGATTTGAGCTGTCGATGCGGTCGGCATCGGAGCAACTAGAAG 20408 Query 37257 GCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATC 37316 ||||||| | || | | || ||| | | ||| | || | ||||||||| | ||| Sbjct 20409 ACTATTTCGTAGACCGTATTTAGCAATATTTTCTTTCAATTTTTCCCAATCCCAGAGATC 20468 Query 37317 TGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTT 37376 || || || ||||||||| ||||| ||||||||||| || ||||| | | Sbjct 20469 GGTAGGTTTGCGATCCCACATATCGTATTGGAGAATACCTTTCGATGCGGGAGATCCTTC 20528 Query 37377 ATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATA 37436 ||| || ||||||||||| | || ||||| ||| || |||| |||| ||| | || Sbjct 20529 ATAGGTTTCATAAGGTCCATGGATAGCAGCTAATTCACAGCTAGCCTCTAATGCTCCGTA 20588 Query 37437 ATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATA 37496 ||| ||||||||||||||||||||||| ||| |||| ||||| || || || || | ||| Sbjct 20589 ATAGATTGTTTCGAAAATTTGTATATTCAATTTTTTCGCTTCATCACTTTCAAAAGGATA 20648 Query 37497 GCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTT 37556 | | || || ||| ||||||| | ||| || || ||||| || || ||||| ||| Sbjct 20649 TCTAAGCAAAATGAACGCATCAGCTAGACCTTGTACGCCGATTCCAATCGGTCTGTGTCG 20708 Query 37557 CTTATTAGATCTAGACGA--TTCTATCACTGGATAATAATTGATATCTATTATTTTATTT 37614 | |||| || | ||||| ||| || ||||||||||| | ||| |||||||| || Sbjct 20709 CATATTTGAAC--GACGAGCTTCCGGCAAGGGATAATAATTTACATCAATTATTTTGTTC 20766 Query 37615 AGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA--CATA-AATACGTTA 37671 | |||||| | | ||| | || || |||||| | || | || ||| || Sbjct 20767 AAATTTTTCGTCATAACTTTGATGATGTTTTTCAACTCTCCAAAATCGTAGGATAGATTT 20826 Query 37672 TT---ATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCT 37728 || ||| |||||||| |||| || || |||||||||| ||||| | ||| ||| Sbjct 20827 TTTTGATTGACAAATTTTGGTAACGCAACCGAAGCTAGATTACAAACAGCTATTTCGTCT 20886 Query 37729 -TCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATT 37787 || | | ||| | |||||| || || |||||| || | || || || | ||| Sbjct 20887 GGCGAT-GAATATTCAACAATCTCGGTGCAAAGATTAGAGCATTTGATGGTGCCAAGATT 20945 Query 37788 GCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTC 37847 ||||||| |||||| |||||||| |||||| || | || | || ||||| ||| Sbjct 20946 TTTTTGATTAGATTTTCTATTACAATGATCTTTGTAGACCATGAATGGTGTTCCGGTTTC 21005 Query 37848 TATTTGAGCCTCGATAATAGATTTCCATAAACTT--CTTGCTTTAA--CGATCGCTTTAA 37903 | ||||| |||| || | || ||| || | ||| || | | || || Sbjct 21006 CACCTGAGCATCGACTATTGCGAACC--AAAGTTCACGAGCTGGAATTTGTTTGCGATA- 21062 Query 37904 tttttttCTTTGTTTCGTA-TTCT-ATATATAATTTGTTAAAATCATTCCCCCATACATC 37961 | |||| | | || || |||| ||| | | | | || || | ||||| ||||| Sbjct 21063 -TCGATTCTCTTTCTCATATTTCTCATAGAGAGCT--TCGAATTCTTCGCCCCAAACATC 21119 Query 37962 GCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCG 38021 ||||| |||||||| || ||||| | ||||| | |||| |||| || Sbjct 21120 TTGCAATCCAGGACATTCTTTGGGGCACATCAACGACCAAACCCCATCGGTTTCGCAACG 21179 Query 38022 TTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTC 38081 || ||| || ||||| |||| |||||||||| || | |||| ||| | ||||||| Sbjct 21180 TTTCATGAACAAATCCGGTATCCATAATGCATAGAAAAGATCTCTGGCACGTAATTCTTC 21239 Query 38082 GTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTAT 38141 || ||| | | || ||| ||| ||||| ||||| || ||||| ||||| | Sbjct 21240 TGAGCCAGTATTTCGTTTCAAATTTAAAAAGTCGAAAATATCTGCATGCCACGGTTCCAA 21299 Query 38142 ATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTT 38201 ||| || | | || || || | |||| ||| || |||| | ||| | | | || | Sbjct 21300 ATATATTGCGAAAGCACCAGGACGCTTATTACCACCTTGATCGACATAACGAGCGGTATC 21359 Query 38202 ATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATA 38261 || || | || ||||| || || | |||||| || | || || | || ||| || Sbjct 21360 GTTGTAAACTCGCAACATCGGAACCAAACCATTTGAATGACCTTTGGTGCCAACTATGTA 21419 Query 38262 AGTACCCTTAGCTCGTATATTACTTATCGACAA-TCCTATTCCACCTGCATGTTTTGATA 38320 | || || ||||| ||| | | | | || || || ||||| || || |||| Sbjct 21420 CGATCCATTTGCTCGAATA-CAATGAACATTAAGACCGATGCCACCGGCTGACTTCGATA 21478 Query 38321 TTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTA 38380 | | ||| |||||||| |||||||| | |||||||| ||||| ||||| || | | Sbjct 21479 TAATAGCACATTGTTTCAACGTATCGTAAATACCTTCAATACTATCATCGGCCATCGTCA 21538 Query 38381 GTATAAAACAACTAGACATTTGAGGCAATGG--AGTTCCGGCGTTAAATAATGTAGGAGA 38438 || |||||| |||||||||||| |||| || || | ||||| || ||||| || Sbjct 21539 ATAAAAAACATGAAGACATTTGAGG--ATGGGTTGTACCAGAATTAAACAAAGTAGGTGA 21596 Query 38439 TGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATC 38498 || ||| | || || |||| |||||| || || || | ||| ||||| Sbjct 21597 GGCGTGTGTAAAAAGACCTTTAGACATTAGATTATACGTCTCGATGGCCGAATCAATATC 21656 Query 38499 ACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT 38558 | || ||||| | | || ||||| | |||||| ||||||||||| | | ||| Sbjct 21657 TTCTTTATGTATACCGATGGCGACTCTCATCAACATATGCTGTGGTCTTTCGACAACTTT 21716 Query 38559 ATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGA 38618 |||| | | |||||| | | ||| ||||| | ||||||||| | || Sbjct 21717 CCCATTCACTCGTAATAGATAGCTTCGTAATAAGGTTTTGAAACCAAAATAATTGTAACT 21776 Query 38619 ATAATCTCTATCGTA 38633 | |||||| ||| || Sbjct 21777 AAAATCTCGATCATA 21791 Score = 96.9 bits (106), Expect = 3e-15 Identities = 184/269 (68%), Gaps = 3/269 (1%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || ||||||| || | ||| | || | | | || | | |||||||||||| ||| Sbjct 19866 TCCACAGTGAATTGAATGGCATTGGCCGCTGGTCTAGTACGTAGATAATACATTCCCGTT 19925 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || | || || ||| | || |||||||| |||| ||| || |||| | | Sbjct 19926 TTCAAACCATTTCGCCAGCAATAGAAATGCATCGATGTCATTTTGGCCATAGTAGCCTCA 19985 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | |||| || ||| |||||||||||||| || |||||||| | || | ||||| Sbjct 19986 GCGATATGAATATTCAAAGATTGACTTTGATCGATGAACGCACCACGATCTACAGCCATC 20045 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 || |||| | ||| |||| ||||||||||| || || || | | ||| || | | | Sbjct 20046 TCACAAATTCTTTTCTGAGGGATCTCCCAAACGGTCTTGTAGAGTGCTTTAATTTCTTTT 20105 Query 37030 GG--TAA-ATCTAAATGTTGAATAGAACC 37055 || ||| ||| | || ||| |||||||| Sbjct 20106 GGAATAATATCAATATTTTGTATAGAACC 20134 >seq4298 Length=5336 Score = 255 bits (282), Expect = 5e-63 Identities = 592/881 (67%), Gaps = 15/881 (2%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 ||||||||||| ||| ||| ||||||||||||||| ||||| || | || || | Sbjct 2286 TTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAAGAGATCTGT 2227 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 ||||| || || ||||| | | |||| | | ||| || | | | ||| || Sbjct 2226 TCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCCAGCTCGACCAAC 2167 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 || | ||| ||| | |||| || |||| | ||| ||| | ||| || || || | Sbjct 2166 AAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGATTCCGATCAAG 2107 Query 11519 TCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATC 11578 || || | || | |||||||| || | || || | ||||| | ||| ||| Sbjct 2106 GAGACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCTTTGGTGACAATC 2047 Query 11579 GACGTTATAACTTC--CTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAA 11636 | || |||| | ||| ||| ||| | | ||| || | ||||| |||| Sbjct 2046 TTCAAGAT--CTTCACCCGAGAAGGTCGATTGACGATGTGTCGGAAAAGCAAACAAGCAA 1989 Query 11637 AATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCA 11696 |||||||||| | ||||| || | || | ||||||| || || || || |||| Sbjct 1988 AATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGTCAAGCCAGGCA 1929 Query 11697 TCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCT 11756 ||| |||||||||||| | |||||| ||||| ||||| || ||||| || || ||||| | Sbjct 1928 TCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAAAAGATTCCTT 1869 Query 11757 CCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTG--CTAGATATCCAT 11812 | || || || || || || | | ||| || | || || | || || ||||| Sbjct 1868 CGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCATCTTGAG-TCCAT 1810 Query 11813 TTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAA 11872 | | ||||| | |||||||| | || || || ||||| || || || || | | Sbjct 1809 CTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGCATTGAAAAGA 1750 Query 11873 TGCATTTTTTCT-ATATT-ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTG 11930 | | | ||| ||||| |||| ||| ||| |||| || | || ||||||||| | Sbjct 1749 A--AATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGAATACATTTCAG 1692 Query 11931 AATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTA 11990 | ||||||||||| || || || ||||||||||| |||||||| ||||||| ||| | Sbjct 1691 AGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGGTATCTGAA 1632 Query 11991 CATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAA 12049 |||| | || ||| | || |||| ||||||||| || || |||||||| | ||||| Sbjct 1631 CATCACGAATGAAA-CGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGCAGCAAAG 1573 Query 12050 AATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCT 12109 ||||||| | ||| || || | |||||| | ||| | || | ||||| |||| Sbjct 1572 AATGCTAACACATGAGAGATGAAATGTTTTTCATTCTTATTCAACGAGTTCCAATGATCT 1513 Query 12110 AAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATAC 12169 | ||| |||||| |||||||| || |||||||| |||| | | || || ||| Sbjct 1512 AGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCTTTCTTGTAC 1453 Query 12170 ATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 || | ||||||||| | || | ||| || || | ||| || Sbjct 1452 ATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAA 1412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468414345278400