Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq135 136 4e-27
seq718 116 4e-21
seq4581 109 5e-19
seq10223 84.2 2e-11
>seq135
Length=1279
Score = 136 bits (150), Expect = 4e-27
Identities = 172/232 (74%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | |||||| || ||||| | ||||| |||||||| || |||||||||||
Sbjct 659 GCCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCT 600
Query 139597 CATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654
| || |||| ||||| | ||||| |||||| | ||||||||||||||||| |||
Sbjct 599 GAGAGT--TCGACCATCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGA 542
Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713
|| || |||||||| || ||| |||| | ||| | | ||| | || |||| || ||
Sbjct 541 GGAATACCTTCTTTATC-TTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTC 483
Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||| || | || | ||||| || ||||| ||||| || || || ||||||
Sbjct 482 CACTTCCAAAGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCATA 431
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | |||||| || ||||| | || || ||||||||||| || |||||||||
Sbjct 886 CCACCACGGAGACGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTC 827
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| ||| || ||||| | ||||| |||||| | |||| |||||| ||||| || ||
Sbjct 826 AATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 767
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| |||||||| || ||| |||| | ||| | | ||| | || |||| || || ||
Sbjct 766 ATACCTTCTTTATC-TTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAAC 708
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | || | || || || ||||| ||||| ||||| || |||||
Sbjct 707 TTCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCAT 660
Score = 116 bits (128), Expect = 4e-21
Identities = 165/230 (72%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | |||||| || ||||| | || || |||||||| || |||||||||||
Sbjct 430 CCACCCCGGAGACGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGCTG 371
Query 139598 ATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655
| || |||| ||||| | |||||||||||| | |||| |||||| ||||| || |
Sbjct 370 AGAGT--TCGACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTG 313
Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715
| || ||||||||||| ||||| ||| | | ||| | || |||| || || |
Sbjct 312 GAATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAA 253
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
| || | || | || || || ||||| ||||| ||||| || ||||||
Sbjct 252 CTTCCAAAGTGATTGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCATA 203
Score = 89.7 bits (98), Expect = 5e-13
Identities = 124/171 (73%), Gaps = 2/171 (1%)
Strand=Plus/Minus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609
||||| || || || | || || ||||| || || || |||||||||| ||| ||
Sbjct 190 CGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTCAATGTTCTACCA 131
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
||||| | ||||||||||| | |||| |||||| ||||| || || || |||||||||
Sbjct 130 TCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTG 71
Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTC 139719
|| ||| |||| | ||| | | ||| | || |||| || ||||| ||
Sbjct 70 TC-TTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGTTCCACTTC 21
>seq718
Length=674
Score = 116 bits (128), Expect = 4e-21
Identities = 160/219 (73%), Gaps = 6/219 (3%)
Strand=Plus/Minus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609
||||| || || || | || || |||||||| || ||||||||||| | || ||||
Sbjct 260 CGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGT--TCGAC 203
Query 139610 --TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTT 139667
||||| | ||||||||||| | |||| |||||| ||||| ||||| || |||||||
Sbjct 202 CATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTT 143
Query 139668 TGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726
|||| ||| |||| | ||| | | ||| | || |||| ||||| || || | ||
Sbjct 142 TGTC-TTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAACTTCCAAAGTA 84
Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
| || || || ||||| ||||| ||||| || ||||||
Sbjct 83 ATGGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCATA 45
Score = 111 bits (122), Expect = 2e-19
Identities = 166/235 (71%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | |||||| || ||||| | ||||| |||||||| || |||||||||||
Sbjct 507 CCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTG 448
Query 139598 ATTGTGC-----TCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATC 139650
| || | |||| ||||| | ||||| ||||| | |||| |||||| |||||
Sbjct 447 AGAGTTCNGAGTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATC 388
Query 139651 GGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGG 139710
|| || || ||||||||||| ||||| ||| | | ||| | ||| |||| ||
Sbjct 387 TGGTGGAATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGAAGG 328
Query 139711 CTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|| || || | || | || || || ||||| ||||| ||||| || ||||||
Sbjct 327 TTCAACTTCCAAAGTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCATA 273
>seq4581
Length=275
Score = 109 bits (120), Expect = 5e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | |||||| || || || | || || ||||| ||||||||||||||||||
Sbjct 121 CCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTCTGAATGTTATAATCGCTC 180
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| ||| || ||||| | ||||| |||||| | || |||||||||||||| |||||
Sbjct 181 AATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATTAGACGTTGCTGATCTGGAGGA 240
Query 139658 ATGCCTTCTTTGTCGGTGATTTT 139680
|| |||||||| || ||||||
Sbjct 241 ATACCTTCTTTATCTTGGATTTT 263
>seq10223
Length=44262
Score = 84.2 bits (92), Expect = 2e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 152721 ACGGTAAATTGCTGGGAATTGGCCGCCGGAAGCGTACGAAAATAGTACATGCCCGTCTTG 152780
|| || ||||| || ||||||||| || ||||| | ||| ||||| ||||| ||
Sbjct 19869 ACAGTGAATTGAATGGCATTGGCCGCTGGTCTAGTACGTAGATAATACATTCCCGTTTTC 19928
Query 152781 AGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATCTTAGCCAAAGTAGGGTCGGCC 152840
| ||| | |||||| || | |||| ||| | ||| || |||| ||||| || ||
Sbjct 19929 AAACCATTTCGCCAGCAATAGAAATGCATCGATGTCATTTTGGCCATAGTAGCCTCAGCG 19988
Query 152841 ATGTACACGTTAAACGATTGACTTTGATCAATAAATGCGCCTCTATCTGCTGCCATGTC 152899
|| | | || || |||||||||||||| || || || || | |||| | ||||| ||
Sbjct 19989 ATATGAATATTCAAAGATTGACTTTGATCGATGAACGCACCACGATCTACAGCCATCTC 20047
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495947052912000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |