Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq135 136 4e-27 seq718 116 4e-21 seq4581 109 5e-19 seq10223 84.2 2e-11 >seq135 Length=1279 Score = 136 bits (150), Expect = 4e-27 Identities = 172/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | |||||| || ||||| | ||||| |||||||| || ||||||||||| Sbjct 659 GCCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCT 600 Query 139597 CATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | || |||| ||||| | ||||| |||||| | ||||||||||||||||| ||| Sbjct 599 GAGAGT--TCGACCATCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGA 542 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || || |||||||| || ||| |||| | ||| | | ||| | || |||| || || Sbjct 541 GGAATACCTTCTTTATC-TTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTC 483 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| || | || | ||||| || ||||| ||||| || || || |||||| Sbjct 482 CACTTCCAAAGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCATA 431 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || ||||| | || || ||||||||||| || ||||||||| Sbjct 886 CCACCACGGAGACGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTC 827 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||||| | ||||| |||||| | |||| |||||| ||||| || || Sbjct 826 AATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 767 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| |||| | ||| | | ||| | || |||| || || || Sbjct 766 ATACCTTCTTTATC-TTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAAC 708 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || ||||| ||||| ||||| || ||||| Sbjct 707 TTCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCAT 660 Score = 116 bits (128), Expect = 4e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || ||||| | || || |||||||| || ||||||||||| Sbjct 430 CCACCCCGGAGACGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGCTG 371 Query 139598 ATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | || |||| ||||| | |||||||||||| | |||| |||||| ||||| || | Sbjct 370 AGAGT--TCGACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTG 313 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || ||||||||||| ||||| ||| | | ||| | || |||| || || | Sbjct 312 GAATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAA 253 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || | || | || || || ||||| ||||| ||||| || |||||| Sbjct 252 CTTCCAAAGTGATTGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCATA 203 Score = 89.7 bits (98), Expect = 5e-13 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| || || || | || || ||||| || || || |||||||||| ||| || Sbjct 190 CGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTCAATGTTCTACCA 131 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| | ||||||||||| | |||| |||||| ||||| || || || ||||||||| Sbjct 130 TCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTG 71 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTC 139719 || ||| |||| | ||| | | ||| | || |||| || ||||| || Sbjct 70 TC-TTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGTTCCACTTC 21 >seq718 Length=674 Score = 116 bits (128), Expect = 4e-21 Identities = 160/219 (73%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| || || || | || || |||||||| || ||||||||||| | || |||| Sbjct 260 CGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGT--TCGAC 203 Query 139610 --TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTT 139667 ||||| | ||||||||||| | |||| |||||| ||||| ||||| || ||||||| Sbjct 202 CATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTT 143 Query 139668 TGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 |||| ||| |||| | ||| | | ||| | || |||| ||||| || || | || Sbjct 142 TGTC-TTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAACTTCCAAAGTA 84 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || || || ||||| ||||| ||||| || |||||| Sbjct 83 ATGGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCATA 45 Score = 111 bits (122), Expect = 2e-19 Identities = 166/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || ||||| | ||||| |||||||| || ||||||||||| Sbjct 507 CCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTG 448 Query 139598 ATTGTGC-----TCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATC 139650 | || | |||| ||||| | ||||| ||||| | |||| |||||| ||||| Sbjct 447 AGAGTTCNGAGTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATC 388 Query 139651 GGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGG 139710 || || || ||||||||||| ||||| ||| | | ||| | ||| |||| || Sbjct 387 TGGTGGAATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGAAGG 328 Query 139711 CTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || || | || | || || || ||||| ||||| ||||| || |||||| Sbjct 327 TTCAACTTCCAAAGTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCATA 273 >seq4581 Length=275 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || || || | || || ||||| |||||||||||||||||| Sbjct 121 CCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTCTGAATGTTATAATCGCTC 180 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||||| | ||||| |||||| | || |||||||||||||| ||||| Sbjct 181 AATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATTAGACGTTGCTGATCTGGAGGA 240 Query 139658 ATGCCTTCTTTGTCGGTGATTTT 139680 || |||||||| || |||||| Sbjct 241 ATACCTTCTTTATCTTGGATTTT 263 >seq10223 Length=44262 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 152721 ACGGTAAATTGCTGGGAATTGGCCGCCGGAAGCGTACGAAAATAGTACATGCCCGTCTTG 152780 || || ||||| || ||||||||| || ||||| | ||| ||||| ||||| || Sbjct 19869 ACAGTGAATTGAATGGCATTGGCCGCTGGTCTAGTACGTAGATAATACATTCCCGTTTTC 19928 Query 152781 AGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATCTTAGCCAAAGTAGGGTCGGCC 152840 | ||| | |||||| || | |||| ||| | ||| || |||| ||||| || || Sbjct 19929 AAACCATTTCGCCAGCAATAGAAATGCATCGATGTCATTTTGGCCATAGTAGCCTCAGCG 19988 Query 152841 ATGTACACGTTAAACGATTGACTTTGATCAATAAATGCGCCTCTATCTGCTGCCATGTC 152899 || | | || || |||||||||||||| || || || || | |||| | ||||| || Sbjct 19989 ATATGAATATTCAAAGATTGACTTTGATCGATGAACGCACCACGATCTACAGCCATCTC 20047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495947052912000