Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq10223 529 3e-145 seq4298 345 6e-90 >seq10223 Length=44262 Score = 529 bits (586), Expect = 3e-145 Identities = 1208/1806 (67%), Gaps = 44/1806 (2%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || |||||||| || || || ||||||||| | ||||| || || |||||||| | Sbjct 20290 ACCTGAAATTCGCCTGATAAAACTCTCCGATTATAAATGTTGGAAGTGTATGGTTCAAAT 20349 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 |||||||| ||||| || |||||||| || ||||| || ||||| || || || | | | Sbjct 20350 GATTCATTGTTTCCTAAGATTTGAGCTGTCGATGCGGTCGGCATCGGAGCAACTAGAAGA 20409 Query 79180 CTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCA 79239 ||||||| ||||||||| || || ||||| | |||||||||||| ||||| Sbjct 20410 CTATTTCGTAGACCGTATTTAGCAATATTTTCTTTCAATTTTTCCCAATCCCAGAGATCG 20469 Query 79240 GACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTG 79299 | || || ||| | ||| ||||| |||||||| || ||| |||||| Sbjct 20470 GTAGGTTTGCGATCCCACATATCGTATTGGAGAATACCTTTCGATGCGGGAGATCCTTCA 20529 Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || |||||||||||||| | | | ||||||||||| || |||||||||||||||||| Sbjct 20530 TAGGTTTCATAAGGTCCATGGATAGCAGCTAATTCACAGCTAGCCTCTAATGCTCCGTAA 20589 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 || || ||||||||||| | |||| | | || ||||| || ||||| |||| | Sbjct 20590 TAGATTGTTTCGAAAATTTGTATATTCAATTTTTTCGCTTCATCACTTTCAAAAGGAT-A 20648 Query 79420 TTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 79478 | |||| | ||| ||||| || |||| ||||| || || || || || ||||| |||| Sbjct 20649 TCTAAGCAAAATGAACGCATCAGCTAGACCTTGTACGCCGATTCCAATCGGTCTGTGTCG 20708 Query 79479 CTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 79538 | |||| ||| |||||| || | ||||||||||| | ||| || ||||| || | Sbjct 20709 CATATTTGAACGACGAGCTTCCGGCAAGGGATAATAATTTACATCAATTATTTTGTTCAA 20768 Query 79539 ATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTAT 79598 ||| | || ||||||| | | || | | |||||| | | || | | Sbjct 20769 ATTTTTCGTCATAACTTTGATGATGTTTTTCAACTCTCCAAAATCGTAGGATAGATTTTT 20828 Query 79599 T------ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCAT-TAG 79651 | ||||| | ||||| || || || ||||||||||| |||| || | | | Sbjct 20829 TTGATTGACAAATTTTGGTAACGCAACCGAAGCTAGATTACAAACAGCTATTTCGTCTGG 20888 Query 79652 C-ATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTT 79710 | || | ||||| | || || ||||| || ||| || || ||||| || | |||| Sbjct 20889 CGAT--GAATATTCAACAATCTCGGTGCAAAGATTAGAGCATTTGATGGTGCCAAGATTT 20946 Query 79711 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCA 79770 | ||||||| ||| | ||||| ||| || || | ||||| || || || ||||| Sbjct 20947 TTTTGATTAGATTTTCTATTACAATGATCTTTGTAGACCATGAATGGTGTTCCGGTTTCC 21006 Query 79771 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC----CTTTATTATAGACTTGTA 79826 | ||||| || | || || ||| | | ||||| ||| || || || Sbjct 21007 ACCTGAGCATCGACTATTGCGAACCAAAGTTCACGAGCTGGAATTTGTTTGCGA----TA 21062 Query 79827 TCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTC 79886 || || ||| | || |||| ||| | |||||| || || ||||||||||| | Sbjct 21063 TCGATTCTCTTTCTCATATTTCTCATAGAGAGCTTCGAATTCTTCGCCCCAAACATCTTG 21122 Query 79887 TAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTT 79946 |||||||||||||| | || |||||||||||||| | ||||| | ||||| Sbjct 21123 CAATCCAGGACATTCTTTGGGGCACATCAACGACCAAACCCCATCGGTTTCGCAACGTTT 21182 Query 79947 CATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGT 80005 ||| || | ||| || ||||| | || ||| || |||||||||| | || || Sbjct 21183 CATGAACAAATCCGGTATCCATAATGC-ATAGAAAAGATCTCTGGCACGTAATTCTTCTG 21241 Query 80006 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 80065 || ||||| ||| | || | || | | |||||| | ||||||||||||||| | Sbjct 21242 AGCCAGTATTTCGTTTCAAATTTAAAAAGTCGAAAATATCTGCATGCCACGGTTCCAAAT 21301 Query 80066 ATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 80125 |||| || | | | || || || || || || || ||||| | || | |||||| | | Sbjct 21302 ATATTGCGAAAGCACCAGGACGCTTATTACCACCTTGATCGACATAACGAGCGGTATCGT 21361 Query 80126 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGC 80185 | ||||||| |||||| |||| | |||||| || ||| ||||| || || || Sbjct 21362 TGTAAACTCGCAACATCGGAACCAAACCATTTGAATGACCTTTGGTGCCAACTATGTACG 21421 Query 80186 TTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 80245 |||| | || |||||| | || ||||| || || || || || || || | Sbjct 21422 ATCCATTTGCTCGAATACAATGAACATTAAGACCGATGCCACCGGCTGACTTCGATATAA 21481 Query 80246 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTA 80305 || ||| |||| |||||||| || || || || || |||||||| ||| | | || Sbjct 21482 TAGCACATTGTTTCAACGTATCGTAAATACCTTCAATACTATCATCGGCCATCGTCAATA 21541 Query 80306 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 80365 |||||| ||||||||| || | | || || | |||||| || ||||| || |||| Sbjct 21542 AAAAACATGAAGACATTTGAGGATGGGTTGTACCAGAATTAAACAAAGTAGGTGAGGCGT 21601 Query 80366 GCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATT 80425 | ||||| || ||||| |||||| |||||||| || || || || ||||| || Sbjct 21602 GTGTAAAAAGACCTTTAGACATTAGATTATACGTCTCGATGGCCGAATCAATATCTTCTT 21661 Query 80426 GATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTAT 80485 ||| || || | ||||| | ||| ||||| ||||| |||||||| || | || || Sbjct 21662 TATGTATACCGATGGCGACTCTCATCAACATATGCTGTGGTCTTTCGACAACTTTCCCAT 21721 Query 80486 TTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 80545 | | | || | || | | || ||||| ||||||||||| ||||| ||| | Sbjct 21722 TCACTCGTAATAGATAGCTTCGTAATAAGGTTTTGAAACCAAAATAATTGTAACTAAAAT 21781 Query 80546 CTCGTTCGTAAATAATAACCGAGTTGAG---------TTTATCC-TTA-TATTTGTTAAC 80594 |||| || ||||| || | || ||||| |||||| ||| |||| ||| Sbjct 21782 CTCGATCATAAATTATCGCTGAATTGAGACGATCAGAGTTATCCATTACGATTTTATAA- 21840 Query 80595 TACATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATA 80654 |||| ||| | | ||||||||| | ||| || |||| || ||||| Sbjct 21841 -ACAT-CATCG--------GCGATAATCGGAATAGATTTGCCTGTTTTCTCATCGACATA 21890 Query 80655 GTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGA 80714 ||| | | ||| | || || || || ||| || || || || |||||||| || Sbjct 21891 ATTGTAGAGATCATGAATGACATCTGAGAAATTTTTCTTCGTCTCTTTTTGTAGATTAGA 21950 Query 80715 TACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGC 80774 | | |||| || || | || |||||||| | ||||||||| || || || || Sbjct 21951 AATAGAGATTCGAGCAGCGAGAACAGCATAATCGGTATGTTGTGTTGTCATCGTAGCAGC 22010 Query 80775 TATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGAT 80834 || || || || || ||||||| || ||||| || ||| ||| || || | ||| Sbjct 22011 GATCTCCGCAGCTAGCTCATCCAATTGGACTGTTGTAACGCCAGAATAGATACCATTGAT 22070 Query 80835 AACCTT 80840 ||||| Sbjct 22071 GACCTT 22076 Score = 131 bits (144), Expect = 2e-25 Identities = 177/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 || |||| ||||||||||||| | || || ||| | ||||||||||| ||||||||| Sbjct 19863 TTATCCACAGTGAATTGAATGGCATTGGCCGCTGGTCTAGTACGTAGATAATACATTCCC 19922 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 ||||| | ||| | ||| | ||||||||||| || | ||||| | | | Sbjct 19923 GTTTTCAAACCATTTCGCCAGCAATAGAAATGCATCGATGTCATTTTGGCCATAGTAGCC 19982 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 || || ||||| ||||||| ||||||||||||||||||||| || || | ||| ||||| Sbjct 19983 TCAGCGATATGAATATTCAAAGATTGACTTTGATCGATGAACGCACCACGATCTACAGCC 20042 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 78948 || | || | || || || || ||||||| || || || | | ||||| ||| Sbjct 20043 ATCTCACAAATTCTTTTCTGAGGGATCTCCCAAACGGTCTTGTAGAGTGCTTTAATTTCT 20102 Query 78949 TCTGGAA 78955 | ||||| Sbjct 20103 TTTGGAA 20109 >seq4298 Length=5336 Score = 345 bits (382), Expect = 6e-90 Identities = 620/901 (69%), Gaps = 25/901 (3%) Strand=Plus/Minus Query 49667 ttttttGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATAT 49726 ||||||| ||||| | |||||||||||||||||||||||||| || ||||| || || | Sbjct 2288 TTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAAGAGATCT 2229 Query 49727 TTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAA 49786 |||||||||| || ||||| | ||| |||| ||| || ||| || | Sbjct 2228 GTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCCAGCTCGACCA 2169 Query 49787 TCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 49846 ||| | ||| ||| |||| || || |||||| | ||| ||||| || | Sbjct 2168 ACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGATTCCGATCA 2109 Query 49847 GTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 49906 || || | || | || | ||||||||| ||||| ||||| | || | || Sbjct 2108 AGGAGACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCTTTGGTGACAA 2049 Query 49907 TAGATCTAACGGTTTCTTCACTCG-----GTGGATGCAATAAATGTTTAAACATCAAACA 49961 | | | | | |||||| || || ||| | | ||| || | |||||| Sbjct 2048 TCT---TCAAGAT--CTTCACCCGAGAAGGTCGATTGACGATGTGTCGGAAAAGCAAACA 1994 Query 49962 TGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCC 50021 || ||||| || || || || || || | || | ||| || || || | || Sbjct 1993 AGCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGTCAAGCC 1934 Query 50022 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGAT 50081 ||||| || || || |||||||||||||| || | |||||| || ||||| || ||||| Sbjct 1933 AGGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAAAAGAT 1874 Query 50082 TCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTA---T 50138 |||||| || || || || |||||||| | || || | || | || |||| | | Sbjct 1873 TCCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCATCTTGAGT 1814 Query 50139 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 ||| | |||||| | || ||||| | |||||||||| |||| |||||||| || Sbjct 1813 CCATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGCATTGAA 1754 Query 50199 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACATT 50256 ||| | | | | |||| ||||||| | ||| |||| ||| | || || ||||||| Sbjct 1753 AAGAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGA--ATACATT 1696 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 || || ||||| ||||| ||||| ||||||||||| || ||||||| |||||| | ||| Sbjct 1695 TCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGGTATC 1636 Query 50317 TGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376 || || || | || || ||||||| ||| ||||| |||||||| ||||| || ||| Sbjct 1635 TGAACATCACGAATGAAACGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGCAGCA 1576 Query 50377 AAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTA----TTCCA 50432 || || || || ||||| || ||||||||||| | | ||| | | ||||| Sbjct 1575 AAGAATGCTAACACATGAGAGATGAAATGTTTTTCAT----TCTTATTCAACGAGTTCCA 1520 Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 50492 || || | ||| | || ||| |||||||| ||||||||||| |||||||| || || Sbjct 1519 ATGATCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCTTT 1460 Query 50493 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 || ||||| | |||||| || | ||||| ||||| || | |||||||| ||| ||||| Sbjct 1459 CTTGTACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATCGATTCGGATT 1400 Query 50553 T 50553 | Sbjct 1399 T 1399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718099468130400