Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq4298 221 1e-52 >seq4298 Length=5336 Score = 221 bits (244), Expect = 1e-52 Identities = 588/888 (66%), Gaps = 18/888 (2%) Strand=Plus/Minus Query 13579 TTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATAT 13638 ||||||||||||| ||| | |||||| || || ||||||||||| |||| || || | Sbjct 2288 TTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAAGAGATCT 2229 Query 13639 TTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATA 13698 |||||| ||| ||||||||| ||| | | | ||| || | | || || | | Sbjct 2228 GTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCCAGCTCGACCA 2169 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758 || | |||||| | || || || | | ||| ||| | ||| || || || | Sbjct 2168 ACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGATTCCGATCA 2109 Query 13759 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 ||||| | | ||| |||||||||| || || | | || |||| | | Sbjct 2108 AGGAGACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAAT---CTCGACCGCTTTGGTGA 2052 Query 13819 TAATTGTAATAATCT---CATTAGAAGGAGGATATTTTAGATGTTTA--AAAATTAAACA 13873 ||| | | |||| | |||||| ||| | ||||| | |||| ||||| Sbjct 2051 CAATCTTCAAGATCTTCACCCGAGAAGGTCGAT--TGACGATGTGTCGGAAAAGCAAACA 1994 Query 13874 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAAT 13931 ||||||||||||||||| || ||||| | || | ||| || ||||| || || Sbjct 1993 AGCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAA--GTCAAG 1936 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||||| |||||||||||| | |||||| || || ||||| || || || || || Sbjct 1935 CCAGGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAAAAG 1876 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGA 14050 ||||| || || ||||| ||||| | | ||||| |||| || | | | | || Sbjct 1875 ATTCCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCATCTTGA 1816 Query 14051 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14110 ||||| | ||||||||| | ||| || | | | || || ||||| ||| ||||| Sbjct 1815 -GTCCATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGCATT 1757 Query 14111 AAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14170 || | | | || |||| | || | || || |||| || || || |||||| Sbjct 1756 GAAAAGAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGAATACAT 1697 Query 14171 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCA 14230 ||||||||| || ||||| || || |||||||| |||||||| |||| ||| || | Sbjct 1696 TTCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGGTAT 1637 Query 14231 TTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14289 || || || ||| | ||| | || || | ||| ||||||||||| |||||||| || | Sbjct 1636 CTGAACATCACGAATGAAA-CGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGCAG 1578 Query 14290 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT 14349 |||| ||||| || | | || || | || || | || || | ||||||| Sbjct 1577 CAAAGAATGCTAACACATGAGAGATGAAATGTTTTTCATTCTTATTCAACGAGTTCCAAT 1518 Query 14350 CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTT 14409 || ||| | | ||| ||||| || ||||||||||| || | ||||| | Sbjct 1517 GATCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCTTTCT 1458 Query 14410 TATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC 14457 | ||||| |||| || ||||| ||| || ||||| | ||||||| Sbjct 1457 TGTACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATC 1410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479614904124000