Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq4298 233 2e-56 >seq4298 Length=5336 Score = 233 bits (258), Expect = 2e-56 Identities = 591/888 (67%), Gaps = 18/888 (2%) Strand=Plus/Minus Query 13367 ttttttGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATAT 13426 ||||||||||||| ||| | |||||| ||||| ||||||||||| |||| || || | Sbjct 2288 TTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAAGAGATCT 2229 Query 13427 TTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATA 13486 |||||| ||| |||||||||| ||| | | | ||| || | | || || | | Sbjct 2228 GTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCCAGCTCGACCA 2169 Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546 | || | |||||| | || || || | | ||| ||| | ||| || || || | Sbjct 2168 ACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGATTCCGATCA 2109 Query 13547 GTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606 ||||| | | || |||||||||| || || | | || | || | | Sbjct 2108 AGGAGACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAAT---CTCGACCGCTTTGGTGA 2052 Query 13607 TAATCTTAATAATGT---CATTAGAAGGAGGATATTTTAGATGTTTA--AAAATTAAACA 13661 |||||| | || | | |||||| ||| | ||||| | |||| ||||| Sbjct 2051 CAATCTTCAAGATCTTCACCCGAGAAGGTCGAT--TGACGATGTGTCGGAAAAGCAAACA 1994 Query 13662 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAAT 13719 ||||||||||||||||| || ||||| | || | ||| || ||||| || || Sbjct 1993 AGCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAA--GTCAAG 1936 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 || ||||||| |||||||||||| | |||||| || || || || || || || || || Sbjct 1935 CCAGGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAAAAG 1876 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGT-TTGA 13838 ||||| || || ||||| ||||| | || ||||| |||| || | | | |||| Sbjct 1875 ATTCCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCATCTTGA 1816 Query 13839 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898 ||||| | ||||||||| | ||| || | | | || || ||||| || ||||| Sbjct 1815 -GTCCATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGCATT 1757 Query 13899 GAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 13958 ||| | | || |||| | || | || || |||| || || || |||||| Sbjct 1756 GAAAAGAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGAATACAT 1697 Query 13959 TTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14018 ||||||||| || ||||| || || |||||||| ||||||||||||| ||| |||| Sbjct 1696 TTCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGGTAT 1637 Query 14019 TTGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTG 14077 || || || ||| | ||| | || || | || |||||||| || |||||||| || | Sbjct 1636 CTGAACATCACGAATGAAA-CGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGCAG 1578 Query 14078 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT 14137 |||| ||||| || | | || || | || || | || || | ||||||| Sbjct 1577 CAAAGAATGCTAACACATGAGAGATGAAATGTTTTTCATTCTTATTCAACGAGTTCCAAT 1518 Query 14138 CGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTT 14197 ||| ||| | | ||| ||||| || ||||||||||| || | ||||| | Sbjct 1517 GATCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCTTTCT 1458 Query 14198 TATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC 14245 | ||||| |||| || ||||| ||| || ||||| | ||||||| Sbjct 1457 TGTACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATC 1410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478475972690400