Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq4298 233 2e-56
>seq4298
Length=5336
Score = 233 bits (258), Expect = 2e-56
Identities = 591/888 (67%), Gaps = 18/888 (2%)
Strand=Plus/Minus
Query 13367 ttttttGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATAT 13426
||||||||||||| ||| | |||||| ||||| ||||||||||| |||| || || |
Sbjct 2288 TTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAAGAGATCT 2229
Query 13427 TTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATA 13486
|||||| ||| |||||||||| ||| | | | ||| || | | || || | |
Sbjct 2228 GTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCCAGCTCGACCA 2169
Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546
| || | |||||| | || || || | | ||| ||| | ||| || || || |
Sbjct 2168 ACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGATTCCGATCA 2109
Query 13547 GTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606
||||| | | || |||||||||| || || | | || | || | |
Sbjct 2108 AGGAGACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAAT---CTCGACCGCTTTGGTGA 2052
Query 13607 TAATCTTAATAATGT---CATTAGAAGGAGGATATTTTAGATGTTTA--AAAATTAAACA 13661
|||||| | || | | |||||| ||| | ||||| | |||| |||||
Sbjct 2051 CAATCTTCAAGATCTTCACCCGAGAAGGTCGAT--TGACGATGTGTCGGAAAAGCAAACA 1994
Query 13662 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAAT 13719
||||||||||||||||| || ||||| | || | ||| || ||||| || ||
Sbjct 1993 AGCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAA--GTCAAG 1936
Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779
|| ||||||| |||||||||||| | |||||| || || || || || || || || ||
Sbjct 1935 CCAGGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAAAAG 1876
Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGT-TTGA 13838
||||| || || ||||| ||||| | || ||||| |||| || | | | ||||
Sbjct 1875 ATTCCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCATCTTGA 1816
Query 13839 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898
||||| | ||||||||| | ||| || | | | || || ||||| || |||||
Sbjct 1815 -GTCCATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGCATT 1757
Query 13899 GAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 13958
||| | | || |||| | || | || || |||| || || || ||||||
Sbjct 1756 GAAAAGAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGAATACAT 1697
Query 13959 TTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14018
||||||||| || ||||| || || |||||||| ||||||||||||| ||| ||||
Sbjct 1696 TTCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGGTAT 1637
Query 14019 TTGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTG 14077
|| || || ||| | ||| | || || | || |||||||| || |||||||| || |
Sbjct 1636 CTGAACATCACGAATGAAA-CGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGCAG 1578
Query 14078 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT 14137
|||| ||||| || | | || || | || || | || || | |||||||
Sbjct 1577 CAAAGAATGCTAACACATGAGAGATGAAATGTTTTTCATTCTTATTCAACGAGTTCCAAT 1518
Query 14138 CGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTT 14197
||| ||| | | ||| ||||| || ||||||||||| || | ||||| |
Sbjct 1517 GATCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCTTTCT 1458
Query 14198 TATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC 14245
| ||||| |||| || ||||| ||| || ||||| | |||||||
Sbjct 1457 TGTACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATC 1410
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478475972690400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |