Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq10223 479 4e-130
seq4298 343 2e-89
>seq10223
Length=44262
Score = 479 bits (530), Expect = 4e-130
Identities = 1192/1804 (66%), Gaps = 40/1804 (2%)
Strand=Plus/Plus
Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202
|| |||||||| || || || ||||| ||| | ||||| || || || ||||| | |
Sbjct 20290 ACCTGAAATTCGCCTGATAAAACTCTCCGATTATAAATGTTGGAAGTGTATGGTTCAAAT 20349
Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262
|| ||||| ||||| || |||||||| || ||||| |||||||| || || || | |||
Sbjct 20350 GATTCATTGTTTCCTAAGATTTGAGCTGTCGATGCGGTCGGCATCGGAGCAACTAGAAGA 20409
Query 71263 CTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCC 71322
||||||| ||||| | | || || ||||| | |||||||| ||| |||||
Sbjct 20410 CTATTTCGTAGACCGTATTTAGCAATATTTTCTTTCAATTTTTCCCAATCCCAGAGATCG 20469
Query 71323 GATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCA 71382
| ||| || || || ||| |||||| ||
Sbjct 20470 GTAGGTTTGCGATCCCACATATCGTATTGGAGAATACCTTTCGATGCGGGAGATCCTTCA 20529
Query 71383 TATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAA 71442
|| || || || ||||| | | | |||| |||||| || |||||||||||||| |||
Sbjct 20530 TAGGTTTCATAAGGTCCATGGATAGCAGCTAATTCACAGCTAGCCTCTAATGCTCCGTAA 20589
Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502
|| || ||||||||||| | |||| | | || ||||| || ||||| |||||
Sbjct 20590 TAGATTGTTTCGAAAATTTGTATATTCAATTTTTTCGCTTCATCACTTTCAAAAGGATA- 20648
Query 71503 TTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCT 71561
| |||| | ||| ||||| || |||| ||||| ||||| || || || ||||||||||
Sbjct 20649 TCTAAGCAAAATGAACGCATCAGCTAGACCTTGTACGCCGATTCCAATCGGTCTGTGTCG 20708
Query 71562 CTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 71621
| |||| ||| |||||| || | ||||||||||| | ||| || ||||| || |
Sbjct 20709 CATATTTGAACGACGAGCTTCCGGCAAGGGATAATAATTTACATCAATTATTTTGTTCAA 20768
Query 71622 ATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTAT 71681
|||| | || ||||||| | | || | | |||||| | || | |
Sbjct 20769 ATTTTTCGTCATAACTTTGATGATGTTTTTCAACTCTCCAAAATCGTAGGATAGATTTTT 20828
Query 71682 TACAA--ACACGTTC----AAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT-TAG 71734
| | ||| || || ||||| || || ||||||||||| |||| || | | |
Sbjct 20829 TTGATTGACAAATTTTGGTAACGCAACCGAAGCTAGATTACAAACAGCTATTTCGTCTGG 20888
Query 71735 C-ATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 71793
| || | ||||| | ||| || |||||||||||| || |||||||| || | ||||
Sbjct 20889 CGAT--GAATATTCAACAATCTCGGTGCAAAGATTAGAGCATTTGATGGTGCCAAGATTT 20946
Query 71794 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCA 71853
| ||||||| ||| | ||||| ||| || || | || || || || || |||||
Sbjct 20947 TTTTGATTAGATTTTCTATTACAATGATCTTTGTAGACCATGAATGGTGTTCCGGTTTCC 21006
Query 71854 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTC 71913
| ||||| || | || || ||| | | ||||| ||| || ||||
Sbjct 21007 ACCTGAGCATCGACTATTGCGAACCAAAGTTCACGAGCTGGAATTTGTTTGCGATATCGA 21066
Query 71914 TTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAAT 71973
|| ||| | || |||| ||| | |||||| || || |||||| ||| | |||
Sbjct 21067 TTCTCTTTCTCATATTTCTCATAGAGAGCTTCGAATTCTTCGCCCCAAACATCTTGCAAT 21126
Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033
||||||||||| || || |||||||| ||||| | ||||| | ||||||||
Sbjct 21127 CCAGGACATTCTTTGGGGCACATCAACGACCAAACCCCATCGGTTTCGCAACGTTTCATG 21186
Query 72034 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCC 72092
|| | ||| || ||||| | || ||| || |||||||||| | || || ||
Sbjct 21187 AACAAATCCGGTATCCATAATGC-ATAGAAAAGATCTCTGGCACGTAATTCTTCTGAGCC 21245
Query 72093 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 72152
||||| ||| | || | || | | |||||| | ||||||||||||||| |||||
Sbjct 21246 AGTATTTCGTTTCAAATTTAAAAAGTCGAAAATATCTGCATGCCACGGTTCCAAATATAT 21305
Query 72153 GGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 72212
|| | | | || || || || || || || ||||| | || | |||||| | || ||
Sbjct 21306 TGCGAAAGCACCAGGACGCTTATTACCACCTTGATCGACATAACGAGCGGTATCGTTGTA 21365
Query 72213 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 72272
||||| |||||| |||| | |||||| || ||| ||||| || || || |||
Sbjct 21366 AACTCGCAACATCGGAACCAAACCATTTGAATGACCTTTGGTGCCAACTATGTACGATCC 21425
Query 72273 ACTGGCACGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 72330
| | || |||||| || ||| | |||| || || || || || || || |
Sbjct 21426 ATTTGCTCGAATACAATGAACATTAA--GACCGATGCCACCGGCTGACTTCGATATAATA 21483
Query 72331 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 72390
|| ||| |||| |||||||| || || || || ||||||||||| ||| | | || |
Sbjct 21484 GCACATTGTTTCAACGTATCGTAAATACCTTCAATACTATCATCGGCCATCGTCAATAAA 21543
Query 72391 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450
||||| ||||||||| || | | || || | |||||| || ||||| || |||||
Sbjct 21544 AAACATGAAGACATTTGAGGATGGGTTGTACCAGAATTAAACAAAGTAGGTGAGGCGTGT 21603
Query 72451 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGA 72510
||||| || ||||| |||||| |||||||| || || || || ||||| || |
Sbjct 21604 GTAAAAAGACCTTTAGACATTAGATTATACGTCTCGATGGCCGAATCAATATCTTCTTTA 21663
Query 72511 TGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTT 72570
||||| || | ||||| | ||| ||||||||||| |||||||| || | || |||
Sbjct 21664 TGTATACCGATGGCGACTCTCATCAACATATGCTGTGGTCTTTCGACAACTTTCCCATTC 21723
Query 72571 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 72630
| | || | ||| | | || ||||| ||||||||||| ||||| ||| |||
Sbjct 21724 ACTCGTAATAGATAGCTTCGTAATAAGGTTTTGAAACCAAAATAATTGTAACTAAAATCT 21783
Query 72631 CGTTCGTAAATAATAACCGAATTGAG---------TTTATCC-TTA-TATTTGTTAACTA 72679
|| || ||||| || | |||||||| |||||| ||| |||| ||| |
Sbjct 21784 CGATCATAAATTATCGCTGAATTGAGACGATCAGAGTTATCCATTACGATTTTATAAACA 21843
Query 72680 TATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGT 72739
| ||| | | ||||||||| | ||| || |||| || ||||| |
Sbjct 21844 T---CATCG--------GCGATAATCGGAATAGATTTGCCTGTTTTCTCATCGACATAAT 21892
Query 72740 TGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATA 72799
|| | | ||| | || || || || ||| || || || || |||||||| || |
Sbjct 21893 TGTAGAGATCATGAATGACATCTGAGAAATTTTTCTTCGTCTCTTTTTGTAGATTAGAAA 21952
Query 72800 CGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTA 72859
| |||| || || |||| |||||||| | ||||||||| || || || || |
Sbjct 21953 TAGAGATTCGAGCAGCGAGAACAGCATAATCGGTATGTTGTGTTGTCATCGTAGCAGCGA 22012
Query 72860 TTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAA 72919
| || || || || ||||||| || ||||| || ||| ||| || || | ||| |
Sbjct 22013 TCTCCGCAGCTAGCTCATCCAATTGGACTGTTGTAACGCCAGAATAGATACCATTGATGA 22072
Query 72920 CCTT 72923
||||
Sbjct 22073 CCTT 22076
Score = 102 bits (112), Expect = 1e-16
Identities = 173/248 (70%), Gaps = 2/248 (1%)
Strand=Plus/Plus
Query 70792 TTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCT 70851
|| |||| || || ||||||| | || || | | | ||||||||||| ||||| ||
Sbjct 19863 TTATCCACAGTGAATTGAATGGCATTGGCCGCTGGTCTAGTACGTAGATAATACATTCCC 19922
Query 70852 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGG-AATAGCTAGG 70910
||||| | ||| | ||| | || |||||||| || | ||||| |||| |||
Sbjct 19923 GTTTTCAAACCATTTCGCCAGCAATAGAAATGCATCGATGTCATTTTGGCCATAG-TAGC 19981
Query 70911 ATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 70970
|| || || |||||||||| || ||||||||||||||||| || || | ||| ||||
Sbjct 19982 CTCAGCGATATGAATATTCAAAGATTGACTTTGATCGATGAACGCACCACGATCTACAGC 20041
Query 70971 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATC 71030
||| | || | || || || || ||||||| || || || | | ||||| ||
Sbjct 20042 CATCTCACAAATTCTTTTCTGAGGGATCTCCCAAACGGTCTTGTAGAGTGCTTTAATTTC 20101
Query 71031 TTCTGGAA 71038
|| |||||
Sbjct 20102 TTTTGGAA 20109
>seq4298
Length=5336
Score = 343 bits (380), Expect = 2e-89
Identities = 617/897 (69%), Gaps = 17/897 (2%)
Strand=Plus/Minus
Query 41772 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATAT 41831
||||||| ||||| | ||||||||||||||||||||||| || || ||||| || || |
Sbjct 2288 TTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAAGAGATCT 2229
Query 41832 TTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAA 41891
|||||||||| || ||||| | ||| |||| ||| || ||| || |
Sbjct 2228 GTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCCAGCTCGACCA 2169
Query 41892 TCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 41951
||| | ||| ||| | |||| || || |||||| | ||| ||||| || |
Sbjct 2168 ACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGATTCCGATCA 2109
Query 41952 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011
|| || | || | || | ||||||||| ||||| |||||| | || | ||
Sbjct 2108 AGGAGACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCTTTGGTGACAA 2049
Query 42012 TAGATCTTACTGTTTCTTCACTCG-----GTGGATACAATAAATGTTTAAACATCAAACA 42066
| ||| | | |||||| || || ||| | | ||| || | ||||||
Sbjct 2048 T----CTTCAAGAT-CTTCACCCGAGAAGGTCGATTGACGATGTGTCGGAAAAGCAAACA 1994
Query 42067 TGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 42126
|| ||||| || || || || ||||| | || ||||| || || || | ||
Sbjct 1993 AGCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGTCAAGCC 1934
Query 42127 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGAT 42186
||||| || || || |||||||||||||| |||| |||||| || ||||| || |||||
Sbjct 1933 AGGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAAAAGAT 1874
Query 42187 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTA---T 42243
|||||| || || || || |||| ||| | || || | | | || |||| | |
Sbjct 1873 TCCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCATCTTGAGT 1814
Query 42244 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303
||| | |||||| | || ||||| | |||||||||| |||| |||||||| ||
Sbjct 1813 CCATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGCATTGAA 1754
Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCA--AAAGACTATACATT 42361
||| | | | | |||| ||||||| | ||| |||| ||| | || || |||||||
Sbjct 1753 AAGAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGA--ATACATT 1696
Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421
|| || ||||| ||||| ||||| ||||||||||| || ||||||| ||||| | | |
Sbjct 1695 TCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGGTATC 1636
Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481
|| || || | || || ||||||| ||| || || |||||||| ||||| || |||
Sbjct 1635 TGAACATCACGAATGAAACGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGCAGCA 1576
Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCA 42541
|| || || || ||||| || |||| |||||| | | | || ||||||| |
Sbjct 1575 AAGAATGCTAACACATGAGAGATGAAATGTTTTTCATTCTTATTCAACGAGTTCCAATGA 1516
Query 42542 TTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTA 42601
| | ||| | || ||| |||||||| || |||||||| ||||| || || || ||
Sbjct 1515 TCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCTTTCTTG 1456
Query 42602 TACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658
||||| | ||||||||| | ||||||||||| || | |||||||| ||| ||||||
Sbjct 1455 TACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATCGATTCGGATTT 1399
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670980978933600
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