Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq10223 479 4e-130 seq4298 343 2e-89 >seq10223 Length=44262 Score = 479 bits (530), Expect = 4e-130 Identities = 1192/1804 (66%), Gaps = 40/1804 (2%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || |||||||| || || || ||||| ||| | ||||| || || || ||||| | | Sbjct 20290 ACCTGAAATTCGCCTGATAAAACTCTCCGATTATAAATGTTGGAAGTGTATGGTTCAAAT 20349 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 || ||||| ||||| || |||||||| || ||||| |||||||| || || || | ||| Sbjct 20350 GATTCATTGTTTCCTAAGATTTGAGCTGTCGATGCGGTCGGCATCGGAGCAACTAGAAGA 20409 Query 71263 CTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCC 71322 ||||||| ||||| | | || || ||||| | |||||||| ||| ||||| Sbjct 20410 CTATTTCGTAGACCGTATTTAGCAATATTTTCTTTCAATTTTTCCCAATCCCAGAGATCG 20469 Query 71323 GATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCA 71382 | ||| || || || ||| |||||| || Sbjct 20470 GTAGGTTTGCGATCCCACATATCGTATTGGAGAATACCTTTCGATGCGGGAGATCCTTCA 20529 Query 71383 TATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAA 71442 || || || || ||||| | | | |||| |||||| || |||||||||||||| ||| Sbjct 20530 TAGGTTTCATAAGGTCCATGGATAGCAGCTAATTCACAGCTAGCCTCTAATGCTCCGTAA 20589 Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502 || || ||||||||||| | |||| | | || ||||| || ||||| ||||| Sbjct 20590 TAGATTGTTTCGAAAATTTGTATATTCAATTTTTTCGCTTCATCACTTTCAAAAGGATA- 20648 Query 71503 TTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCT 71561 | |||| | ||| ||||| || |||| ||||| ||||| || || || |||||||||| Sbjct 20649 TCTAAGCAAAATGAACGCATCAGCTAGACCTTGTACGCCGATTCCAATCGGTCTGTGTCG 20708 Query 71562 CTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 71621 | |||| ||| |||||| || | ||||||||||| | ||| || ||||| || | Sbjct 20709 CATATTTGAACGACGAGCTTCCGGCAAGGGATAATAATTTACATCAATTATTTTGTTCAA 20768 Query 71622 ATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTAT 71681 |||| | || ||||||| | | || | | |||||| | || | | Sbjct 20769 ATTTTTCGTCATAACTTTGATGATGTTTTTCAACTCTCCAAAATCGTAGGATAGATTTTT 20828 Query 71682 TACAA--ACACGTTC----AAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT-TAG 71734 | | ||| || || ||||| || || ||||||||||| |||| || | | | Sbjct 20829 TTGATTGACAAATTTTGGTAACGCAACCGAAGCTAGATTACAAACAGCTATTTCGTCTGG 20888 Query 71735 C-ATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 71793 | || | ||||| | ||| || |||||||||||| || |||||||| || | |||| Sbjct 20889 CGAT--GAATATTCAACAATCTCGGTGCAAAGATTAGAGCATTTGATGGTGCCAAGATTT 20946 Query 71794 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCA 71853 | ||||||| ||| | ||||| ||| || || | || || || || || ||||| Sbjct 20947 TTTTGATTAGATTTTCTATTACAATGATCTTTGTAGACCATGAATGGTGTTCCGGTTTCC 21006 Query 71854 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTC 71913 | ||||| || | || || ||| | | ||||| ||| || |||| Sbjct 21007 ACCTGAGCATCGACTATTGCGAACCAAAGTTCACGAGCTGGAATTTGTTTGCGATATCGA 21066 Query 71914 TTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAAT 71973 || ||| | || |||| ||| | |||||| || || |||||| ||| | ||| Sbjct 21067 TTCTCTTTCTCATATTTCTCATAGAGAGCTTCGAATTCTTCGCCCCAAACATCTTGCAAT 21126 Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 ||||||||||| || || |||||||| ||||| | ||||| | |||||||| Sbjct 21127 CCAGGACATTCTTTGGGGCACATCAACGACCAAACCCCATCGGTTTCGCAACGTTTCATG 21186 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCC 72092 || | ||| || ||||| | || ||| || |||||||||| | || || || Sbjct 21187 AACAAATCCGGTATCCATAATGC-ATAGAAAAGATCTCTGGCACGTAATTCTTCTGAGCC 21245 Query 72093 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 72152 ||||| ||| | || | || | | |||||| | ||||||||||||||| ||||| Sbjct 21246 AGTATTTCGTTTCAAATTTAAAAAGTCGAAAATATCTGCATGCCACGGTTCCAAATATAT 21305 Query 72153 GGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 72212 || | | | || || || || || || || ||||| | || | |||||| | || || Sbjct 21306 TGCGAAAGCACCAGGACGCTTATTACCACCTTGATCGACATAACGAGCGGTATCGTTGTA 21365 Query 72213 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 72272 ||||| |||||| |||| | |||||| || ||| ||||| || || || ||| Sbjct 21366 AACTCGCAACATCGGAACCAAACCATTTGAATGACCTTTGGTGCCAACTATGTACGATCC 21425 Query 72273 ACTGGCACGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 72330 | | || |||||| || ||| | |||| || || || || || || || | Sbjct 21426 ATTTGCTCGAATACAATGAACATTAA--GACCGATGCCACCGGCTGACTTCGATATAATA 21483 Query 72331 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 72390 || ||| |||| |||||||| || || || || ||||||||||| ||| | | || | Sbjct 21484 GCACATTGTTTCAACGTATCGTAAATACCTTCAATACTATCATCGGCCATCGTCAATAAA 21543 Query 72391 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450 ||||| ||||||||| || | | || || | |||||| || ||||| || ||||| Sbjct 21544 AAACATGAAGACATTTGAGGATGGGTTGTACCAGAATTAAACAAAGTAGGTGAGGCGTGT 21603 Query 72451 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGA 72510 ||||| || ||||| |||||| |||||||| || || || || ||||| || | Sbjct 21604 GTAAAAAGACCTTTAGACATTAGATTATACGTCTCGATGGCCGAATCAATATCTTCTTTA 21663 Query 72511 TGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTT 72570 ||||| || | ||||| | ||| ||||||||||| |||||||| || | || ||| Sbjct 21664 TGTATACCGATGGCGACTCTCATCAACATATGCTGTGGTCTTTCGACAACTTTCCCATTC 21723 Query 72571 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 72630 | | || | ||| | | || ||||| ||||||||||| ||||| ||| ||| Sbjct 21724 ACTCGTAATAGATAGCTTCGTAATAAGGTTTTGAAACCAAAATAATTGTAACTAAAATCT 21783 Query 72631 CGTTCGTAAATAATAACCGAATTGAG---------TTTATCC-TTA-TATTTGTTAACTA 72679 || || ||||| || | |||||||| |||||| ||| |||| ||| | Sbjct 21784 CGATCATAAATTATCGCTGAATTGAGACGATCAGAGTTATCCATTACGATTTTATAAACA 21843 Query 72680 TATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGT 72739 | ||| | | ||||||||| | ||| || |||| || ||||| | Sbjct 21844 T---CATCG--------GCGATAATCGGAATAGATTTGCCTGTTTTCTCATCGACATAAT 21892 Query 72740 TGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATA 72799 || | | ||| | || || || || ||| || || || || |||||||| || | Sbjct 21893 TGTAGAGATCATGAATGACATCTGAGAAATTTTTCTTCGTCTCTTTTTGTAGATTAGAAA 21952 Query 72800 CGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTA 72859 | |||| || || |||| |||||||| | ||||||||| || || || || | Sbjct 21953 TAGAGATTCGAGCAGCGAGAACAGCATAATCGGTATGTTGTGTTGTCATCGTAGCAGCGA 22012 Query 72860 TTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAA 72919 | || || || || ||||||| || ||||| || ||| ||| || || | ||| | Sbjct 22013 TCTCCGCAGCTAGCTCATCCAATTGGACTGTTGTAACGCCAGAATAGATACCATTGATGA 22072 Query 72920 CCTT 72923 |||| Sbjct 22073 CCTT 22076 Score = 102 bits (112), Expect = 1e-16 Identities = 173/248 (70%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 70792 TTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCT 70851 || |||| || || ||||||| | || || | | | ||||||||||| ||||| || Sbjct 19863 TTATCCACAGTGAATTGAATGGCATTGGCCGCTGGTCTAGTACGTAGATAATACATTCCC 19922 Query 70852 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGG-AATAGCTAGG 70910 ||||| | ||| | ||| | || |||||||| || | ||||| |||| ||| Sbjct 19923 GTTTTCAAACCATTTCGCCAGCAATAGAAATGCATCGATGTCATTTTGGCCATAG-TAGC 19981 Query 70911 ATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 70970 || || || |||||||||| || ||||||||||||||||| || || | ||| |||| Sbjct 19982 CTCAGCGATATGAATATTCAAAGATTGACTTTGATCGATGAACGCACCACGATCTACAGC 20041 Query 70971 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATC 71030 ||| | || | || || || || ||||||| || || || | | ||||| || Sbjct 20042 CATCTCACAAATTCTTTTCTGAGGGATCTCCCAAACGGTCTTGTAGAGTGCTTTAATTTC 20101 Query 71031 TTCTGGAA 71038 || ||||| Sbjct 20102 TTTTGGAA 20109 >seq4298 Length=5336 Score = 343 bits (380), Expect = 2e-89 Identities = 617/897 (69%), Gaps = 17/897 (2%) Strand=Plus/Minus Query 41772 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATAT 41831 ||||||| ||||| | ||||||||||||||||||||||| || || ||||| || || | Sbjct 2288 TTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAAGAGATCT 2229 Query 41832 TTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAA 41891 |||||||||| || ||||| | ||| |||| ||| || ||| || | Sbjct 2228 GTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCCAGCTCGACCA 2169 Query 41892 TCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 41951 ||| | ||| ||| | |||| || || |||||| | ||| ||||| || | Sbjct 2168 ACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGATTCCGATCA 2109 Query 41952 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 || || | || | || | ||||||||| ||||| |||||| | || | || Sbjct 2108 AGGAGACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCTTTGGTGACAA 2049 Query 42012 TAGATCTTACTGTTTCTTCACTCG-----GTGGATACAATAAATGTTTAAACATCAAACA 42066 | ||| | | |||||| || || ||| | | ||| || | |||||| Sbjct 2048 T----CTTCAAGAT-CTTCACCCGAGAAGGTCGATTGACGATGTGTCGGAAAAGCAAACA 1994 Query 42067 TGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 42126 || ||||| || || || || ||||| | || ||||| || || || | || Sbjct 1993 AGCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGTCAAGCC 1934 Query 42127 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGAT 42186 ||||| || || || |||||||||||||| |||| |||||| || ||||| || ||||| Sbjct 1933 AGGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAAAAGAT 1874 Query 42187 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTA---T 42243 |||||| || || || || |||| ||| | || || | | | || |||| | | Sbjct 1873 TCCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCATCTTGAGT 1814 Query 42244 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 ||| | |||||| | || ||||| | |||||||||| |||| |||||||| || Sbjct 1813 CCATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGCATTGAA 1754 Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCA--AAAGACTATACATT 42361 ||| | | | | |||| ||||||| | ||| |||| ||| | || || ||||||| Sbjct 1753 AAGAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGA--ATACATT 1696 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || || ||||| ||||| ||||| ||||||||||| || ||||||| ||||| | | | Sbjct 1695 TCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGGTATC 1636 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481 || || || | || || ||||||| ||| || || |||||||| ||||| || ||| Sbjct 1635 TGAACATCACGAATGAAACGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGCAGCA 1576 Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCA 42541 || || || || ||||| || |||| |||||| | | | || ||||||| | Sbjct 1575 AAGAATGCTAACACATGAGAGATGAAATGTTTTTCATTCTTATTCAACGAGTTCCAATGA 1516 Query 42542 TTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTA 42601 | | ||| | || ||| |||||||| || |||||||| ||||| || || || || Sbjct 1515 TCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCTTTCTTG 1456 Query 42602 TACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 ||||| | ||||||||| | ||||||||||| || | |||||||| ||| |||||| Sbjct 1455 TACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATCGATTCGGATTT 1399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670980978933600