Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4298 136 6e-27 >seq4298 Length=5336 Score = 136 bits (150), Expect = 6e-27 Identities = 554/849 (65%), Gaps = 32/849 (4%) Strand=Plus/Plus Query 125016 GACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGAT 125075 || || ||||| |||||||| || || |||| || |||||||| |||||||| |||||| Sbjct 1439 GATATCTGGGAGATGTACAAGAAAGCGGAGGCATCGTTTTGGACAGTCGAAGAAGTCGAT 1498 Query 125076 CT--GTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTA 125133 | ||| || || | ||||| | |||||| || | | | ||| | | || | Sbjct 1499 TTAAGTCGC--GATCTAGATCATTGGAA--CTCGTT-GAATAAGAATGAAAAACATTTCA 1553 Query 125134 TATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTG 125192 | || || | || || |||||||| | |||||||| || || || ||||| | || Sbjct 1554 TCTCTCATGTGTTAGCATTCTTTGCTGCAAGTGATGGAATAGTTAATGAGAATCTAGCTG 1613 Query 125193 ACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAA 125250 | || ||| || || ||| | || ||||||| ||| || ||||| ||||| || | Sbjct 1614 AG-CGTTTCATTCGTGATGTTCAG-ATACCAGAGGC-TCGATGTTTTTATGGATTTCAGA 1670 Query 125251 TCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCG 125310 || || || || | ||||| |||||||| || || || | | || || | Sbjct 1671 TCGCCATCGAAAATATTCACTCTGAAATGTATTCGTTGCTCATCAATACCTATATAAAAG 1730 Query 125311 ATCCGCAACGTAA-ACACATGCTCTTT--AACGCAATCGACACGGTGCCGTCTATACGTA 125367 || || | | | | || ||||| || || || | || |||| | | | | Sbjct 1731 ATA---AATATGAGAGAGATTTTCTTTTCAATGCCATTCAAACATTGCCTTGTGTCGAGA 1787 Query 125368 AAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCG-TACGCCGACAGA 125426 | || || |||||| || | |||| | || || | | || | | || || | Sbjct 1788 AGAAAGCGAAATGGGCTATCAGATGGACTCAAGATGATA-GAGTTAGCTTTGCTGAACGT 1846 Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 || || || ||||| ||||| || || ||||| || || || |||||||| |||||| Sbjct 1847 CTTGTTGCGTTCGCTGCCGTCGAAGGAATCTTTTTCTCTGGCTCGTTTGCGGCTATCTTT 1906 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||||| || || || ||||| ||||| || |||| |||||| || || || || || Sbjct 1907 TGGCTTAAAAAACGAGGACTGATGCCTGGCTTGACTTTCAGTAATGAATTGATCTCGCGT 1966 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAG 125606 || || || || || ||||| ||||| | | || || || || || |||| | Sbjct 1967 GATGAAGGACTTCATTGTGATTTTGCTTGTTTGCTTTTCCGACAC-AT---CGTC---AA 2019 Query 125607 TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAA 125666 | | | | | || ||| || | || ||||| ||| | || || ||| || ||| Sbjct 2020 TCGACCTTCTCGGGTG--AAGATCTTGAAGATTGTCACCAAAGCGGTCGAGATTGAGCAA 2077 Query 125667 GAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGC 125726 || ||| | ||||| || | || ||| | |||| || || || ||| | ||| | Sbjct 2078 GAATTTTTGACCGACGCCTTGCCTGTCTCCTTGATCGGAATCAATAGCACTTTGATGAGT 2137 Query 125727 GAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTAC 125786 |||||||| || | || |||||| | || |||| || || |||| ||||| Sbjct 2138 GAGTACATCGAATACTGCGCTGATCGTTTGTTGGTCGAGCTGGATGTTGGCAAATTTTAC 2197 Query 125787 AACGCCAAGAATCCCTTTGATTTCAT-GACCAGCATATCACTAGAGGGTAAGACCAACTT 125845 || | || ||||| || |||||| || ||| || || | |||||||| || || || Sbjct 2198 AATACAAAAAATCCATTCTCTTTCATGGAACAG-ATCTCTTTGGAGGGTAAAACTAATTT 2256 Query 125846 TTTCGAGAA 125854 |||||| || Sbjct 2257 TTTCGAAAA 2265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740884495293600