Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq718 158 9e-34 seq135 156 3e-33 >seq718 Length=674 Score = 158 bits (174), Expect = 9e-34 Identities = 165/214 (77%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||| | ||||| |||||||| || || |||||||| ||| ||| | ||| Sbjct 257 AACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCT 198 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || |||||||| |||||| | |||||||||||||| || ||||| ||||||||||| Sbjct 197 TCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTGTCT 138 Query 15272 CAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 |||||| ||| || ||| |||| || |||||| | || || || || |||||||| Sbjct 137 TGAATTTTAGCT-TTGACATTTTCAATCGTATCGGAAGGCTCAACTTCCAAAGTAATGGT 79 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| || |||| |||||| || ||||| |||||| Sbjct 78 TTTTCCAGTCAAAGTTTTCACGAAAATCTGCATA 45 Score = 141 bits (156), Expect = 7e-29 Identities = 157/206 (76%), Gaps = 9/206 (4%) Strand=Plus/Minus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTC-----TCG--CGTCTTCTAATTG 15219 || || |||||||| || || |||||||| ||| ||| ||| | ||||| ||||| Sbjct 477 GTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCNGAGTTCGACCATCTTCCAATTG 418 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||||||| | |||||||||||||| || |||||| ||||||||||| ||||| Sbjct 417 TTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGTATTTT 358 Query 15280 -GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| || ||| |||| || |||||| | ||| || || || || || ||||| || | Sbjct 357 AGCT-TTGACATTTTCAATTGTATCGGAAGGTTCAACTTCCAAAGTGATTGTTTTTCCAG 299 Query 15339 TCAGAGTTTTTACAAAAATTTGCATA 15364 ||| |||||| || ||||| |||||| Sbjct 298 TCAAAGTTTTAACGAAAATCTGCATA 273 Score = 123 bits (136), Expect = 2e-23 Identities = 123/157 (78%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| ||||||||||||||| | |||||||||||||| || |||||| |||||||| Sbjct 663 TCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTA 604 Query 15269 TCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || |||||| ||| || ||| |||| || |||||| | || || || || || || Sbjct 603 TCTTGAATTTTAGCT-TTGACATTTTCAATAGTATCGGAAGGCTCAACTTCCAAAGTGAT 545 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || |||| |||||| || |||||||||||| Sbjct 544 AGTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCATA 508 >seq135 Length=1279 Score = 156 bits (172), Expect = 3e-33 Identities = 155/198 (78%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 ||||| |||||||| || ||||||||||| | |||| | ||||| |||||||||||| Sbjct 856 GTGGATTCTTTTTGAATATTGTAATCGCTCAATGTTCTACCATCTTCCAATTGTTTGCCA 797 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT-GCTCTT 15285 || | |||||||||||||| || |||||| |||||||| || |||||| ||| || Sbjct 796 GCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTGAATTTTAGCT-TT 738 Query 15286 TACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGT 15345 ||| |||| ||||||||| | ||| || || || ||||||||||| || |||| || Sbjct 737 GACATTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTCAATGT 678 Query 15346 TTTTACAAAAATTTGCAT 15363 ||| || ||||| ||||| Sbjct 677 TTTAACGAAAATCTGCAT 660 Score = 145 bits (160), Expect = 6e-30 Identities = 153/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 || || |||||||| || || |||||||| ||| ||| | ||||| |||||||||||| Sbjct 628 GTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCTTCCAATTGTTTGCCA 569 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT-GCTCTT 15285 || | |||| |||||| || || ||||| |||||||| || |||||| ||| || Sbjct 568 GCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCTTGAATTTTAGCT-TT 510 Query 15286 TACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGT 15345 ||| |||| ||||||||| | ||| || || || |||||||| || || |||| ||| Sbjct 509 GACATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGTAATGGTCTTTCCAGTCAAAGT 450 Query 15346 TTTTACAAAAATTTGCATA 15364 ||| |||||||| |||||| Sbjct 449 TTTGACAAAAATCTGCATA 431 Score = 140 bits (154), Expect = 2e-28 Identities = 152/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 ||||| |||||||| || || |||||||| ||| ||| | ||||| |||||||| ||| Sbjct 400 GTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCTTCCAATTGTTTACCA 341 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT-GCTCTT 15285 || | |||||||||||||| || |||||| ||||||||||| ||||| ||| || Sbjct 340 GCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGTATTTTAGCT-TT 282 Query 15286 TACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGT 15345 ||| |||| || |||||| | ||| || || || || || ||||| || |||| || Sbjct 281 GACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTGATTGTTTTTCCAGTCAATGT 222 Query 15346 TTTTACAAAAATTTGCATA 15364 ||| || ||||| |||||| Sbjct 221 TTTCACGAAAATCTGCATA 203 Score = 125 bits (138), Expect = 5e-24 Identities = 141/186 (76%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||| | ||||| ||||| || || ||||||||||| | |||| | ||| Sbjct 187 AACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTCAATGTTCTACCATCT 128 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || |||||||| |||||| | |||||||||||||| || |||||| ||||||||||| Sbjct 127 TCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCT 68 Query 15272 CAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 |||||| ||| || ||| |||| || |||||| | ||| || || || || || || Sbjct 67 TGAATTTTAGCT-TTGACATTTTCAATCGTATCGGAAGGTTCCACTTCCAAAGTGATAGT 9 Query 15331 TTTACC 15336 ||| || Sbjct 8 TTTTCC 3 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/112 (78%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 15254 GGAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTC 15312 |||||||||||||||||| ||||| ||| || || |||| || |||||| | || Sbjct 1276 GGAATTCCTTCTTTGTCATGGATTTTAGCT-TTAACGTTTTCAATTGTATCGGAAGGCTC 1218 Query 15313 TACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| ||||| || |||| |||||| || |||||||||||| Sbjct 1217 AACTTCCAAAGTAATAGTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCATA 1166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362095950847260