Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq718 114 8e-21 seq135 105 4e-18 >seq718 Length=674 Score = 114 bits (126), Expect = 8e-21 Identities = 157/219 (72%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||||||||| || || |||||||| ||||| ||||| | ||||| | Sbjct 260 CGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTGA----GAGTTCG 205 Query 33215 ----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270 || |||||||| || ||| || || |||||||| || || | || || ||||| Sbjct 204 ACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTC 145 Query 33271 TTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330 ||| || ||| ||| || ||| |||||| ||| || | ||| |||| ||| Sbjct 144 TTTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAACTTCCAAAGT 85 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||||||| || | |||||| |||||||| ||||| Sbjct 84 AATGGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46 Score = 105 bits (116), Expect = 4e-18 Identities = 158/222 (71%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAAT--CAGACAAAT-TGAGT 33211 ||||||||||| ||||| || || |||||||| ||||| |||| | || | | |||| Sbjct 495 CGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCNGAGT 436 Query 33212 TGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCC 33267 | | || |||||||| || ||| || || |||||||| || || | || || || Sbjct 435 TCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACC 376 Query 33268 TTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAG 33327 |||||| || || ||| || ||| ||| || ||| |||| ||| |||| Sbjct 375 TTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGAAGGTTCAACTTCCAA 316 Query 33328 AGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || |||||||| || | |||||| |||||||| ||||| Sbjct 315 AGTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274 Score = 82.4 bits (90), Expect = 5e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||| || ||| || || |||||||| || || | || || |||||||| Sbjct 663 TCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTA 604 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || ||| ||| || ||| || | ||| |||| ||| || Sbjct 603 TCTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGCTCAACTTCCAAAGTGATA 544 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| || | |||||| |||||||||||||| Sbjct 543 GTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 509 >seq135 Length=1279 Score = 105 bits (116), Expect = 4e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| || || || || |||||||| ||||||||||| ||| | Sbjct 874 CGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTCAATGTTCTACCA 815 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||| || ||| ||| || |||||||| || || | || || |||||||| Sbjct 814 TCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTA 755 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || ||| ||| || ||| |||| ||| |||| ||| || Sbjct 754 TCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAATG 695 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 |||||||| || | ||||| |||||||| |||||| Sbjct 694 GTTTTTCCAGTCAATGTTTTAACGAAAATCTGCATG 659 Score = 100 bits (110), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || || || || |||||||| ||||| ||||| | ||||| | Sbjct 418 CGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGCTGA----GAGTTCG 363 Query 33215 ----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270 || |||||||| || ||| ||| || |||||||| || || | || || ||||| Sbjct 362 ACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTC 303 Query 33271 TTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330 ||| || || ||| || ||| ||| || ||| |||| ||| |||| ||| Sbjct 302 TTTGTCCTGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGT 243 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||||||| || | ||||| |||||||| ||||| Sbjct 242 GATTGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204 Score = 100 bits (110), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| ||||| || || |||||||| ||||| ||||| | ||||| | Sbjct 646 CGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGA----GAGTTCG 591 Query 33215 ----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270 || |||||||| || ||| ||| || | ||||||||| || | || || ||||| Sbjct 590 ACCATCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTC 531 Query 33271 TTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330 ||| || ||| ||| || ||| ||| || ||| |||| || |||| ||| Sbjct 530 TTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGT 471 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| || | |||||| || ||||| ||||| Sbjct 470 AATGGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||||||||| || || ||||| || ||||||||||| ||| | Sbjct 190 CGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTCAATGTTCTACCA 131 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||| || ||| || || |||||||| || || | || || |||||||| Sbjct 130 TCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTG 71 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || ||| |||||| ||| |||| || |||| ||| || Sbjct 70 TCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGTTCCACTTCCAAAGTGATA 11 Query 33335 GTTTTTCC 33342 |||||||| Sbjct 10 GTTTTTCC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318704326976280