Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq718 114 8e-21
seq135 105 4e-18
>seq718
Length=674
Score = 114 bits (126), Expect = 8e-21
Identities = 157/219 (72%), Gaps = 8/219 (4%)
Strand=Plus/Minus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
||||||||||||||||| || || |||||||| ||||| ||||| | ||||| |
Sbjct 260 CGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTGA----GAGTTCG 205
Query 33215 ----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270
|| |||||||| || ||| || || |||||||| || || | || || |||||
Sbjct 204 ACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTC 145
Query 33271 TTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330
||| || ||| ||| || ||| |||||| ||| || | ||| |||| |||
Sbjct 144 TTTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAACTTCCAAAGT 85
Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| |||||||| || | |||||| |||||||| |||||
Sbjct 84 AATGGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46
Score = 105 bits (116), Expect = 4e-18
Identities = 158/222 (71%), Gaps = 7/222 (3%)
Strand=Plus/Minus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAAT--CAGACAAAT-TGAGT 33211
||||||||||| ||||| || || |||||||| ||||| |||| | || | | ||||
Sbjct 495 CGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCNGAGT 436
Query 33212 TGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCC 33267
| | || |||||||| || ||| || || |||||||| || || | || || ||
Sbjct 435 TCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACC 376
Query 33268 TTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAG 33327
|||||| || || ||| || ||| ||| || ||| |||| ||| ||||
Sbjct 375 TTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGAAGGTTCAACTTCCAA 316
Query 33328 AGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
||| || |||||||| || | |||||| |||||||| |||||
Sbjct 315 AGTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274
Score = 82.4 bits (90), Expect = 5e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274
|| |||||||| || ||| || || |||||||| || || | || || ||||||||
Sbjct 663 TCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTA 604
Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334
|| ||| ||| || ||| ||| || ||| || | ||| |||| ||| ||
Sbjct 603 TCTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGCTCAACTTCCAAAGTGATA 544
Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|||||||| || | |||||| ||||||||||||||
Sbjct 543 GTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 509
>seq135
Length=1279
Score = 105 bits (116), Expect = 4e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
||||| ||||| || || || || |||||||| ||||||||||| ||| |
Sbjct 874 CGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTCAATGTTCTACCA 815
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274
|| |||||||| || ||| ||| || |||||||| || || | || || ||||||||
Sbjct 814 TCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTA 755
Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334
|| ||| ||| || ||| ||| || ||| |||| ||| |||| ||| ||
Sbjct 754 TCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAATG 695
Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
|||||||| || | ||||| |||||||| ||||||
Sbjct 694 GTTTTTCCAGTCAATGTTTTAACGAAAATCTGCATG 659
Score = 100 bits (110), Expect = 2e-16
Identities = 154/219 (70%), Gaps = 8/219 (4%)
Strand=Plus/Minus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
||||||||||| || || || || |||||||| ||||| ||||| | ||||| |
Sbjct 418 CGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGCTGA----GAGTTCG 363
Query 33215 ----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270
|| |||||||| || ||| ||| || |||||||| || || | || || |||||
Sbjct 362 ACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTC 303
Query 33271 TTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330
||| || || ||| || ||| ||| || ||| |||| ||| |||| |||
Sbjct 302 TTTGTCCTGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGT 243
Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| |||||||| || | ||||| |||||||| |||||
Sbjct 242 GATTGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204
Score = 100 bits (110), Expect = 2e-16
Identities = 154/219 (70%), Gaps = 8/219 (4%)
Strand=Plus/Minus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
||||||||||| ||||| || || |||||||| ||||| ||||| | ||||| |
Sbjct 646 CGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGA----GAGTTCG 591
Query 33215 ----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270
|| |||||||| || ||| ||| || | ||||||||| || | || || |||||
Sbjct 590 ACCATCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTC 531
Query 33271 TTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330
||| || ||| ||| || ||| ||| || ||| |||| || |||| |||
Sbjct 530 TTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGT 471
Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || ||||| || | |||||| || ||||| |||||
Sbjct 470 AATGGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432
Score = 87.8 bits (96), Expect = 1e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
||||||||||||||||| || || ||||| || ||||||||||| ||| |
Sbjct 190 CGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTCAATGTTCTACCA 131
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274
|| |||||||| || ||| || || |||||||| || || | || || ||||||||
Sbjct 130 TCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTG 71
Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334
|| ||| ||| || ||| |||||| ||| |||| || |||| ||| ||
Sbjct 70 TCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGTTCCACTTCCAAAGTGATA 11
Query 33335 GTTTTTCC 33342
||||||||
Sbjct 10 GTTTTTCC 3
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318704326976280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |