Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq718 131 1e-25 seq135 125 5e-24 seq4581 86.0 4e-12 >seq718 Length=674 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 ||||||||||| | ||| |||||||| |||||||||||| | | || |||| Sbjct 257 AACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCT 198 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||||||||| || || || ||||| ||||| || || |||| | ||||||||| ||| Sbjct 197 TCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTGTCT 138 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 |||||| |||||| | ||| ||||| | ||||| || || | ||||| ||| Sbjct 137 TGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAACTTCCAAAGTAATGGTT 78 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || ||||| ||||| || || ||||| Sbjct 77 TTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46 Score = 107 bits (118), Expect = 1e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| ||||||||||| || || || ||||| ||||| || || | || | |||||||| Sbjct 665 CATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTT 606 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 ||||| |||||| |||||| | ||| |||||| | ||||| || || | || | Sbjct 605 TATCTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGCTCAACTTCCAAAGTGA 546 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | ||||| || || ||||| ||||| || |||||||| Sbjct 545 TAGTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 509 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 7/219 (3%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAA--TT--GA---CG 43962 |||||||| || | || |||||||| |||||||||||| | | || || || Sbjct 492 AACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCNGAGTTCG 433 Query 43963 CTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTC 44022 |||| ||||||||||| || || || ||||| ||||| || || | || | |||||| Sbjct 432 ACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTC 373 Query 44023 TTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGT 44082 ||| || ||||| |||||| | ||| ||||| | || || || || | || Sbjct 372 TTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGAAGGTTCAACTTCCAAAGT 313 Query 44083 AATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||||| || || ||||| || || || || ||||| Sbjct 312 GATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274 >seq135 Length=1279 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 |||||||| || | || |||||||| |||||||||||| | | || |||| Sbjct 643 AACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCT 584 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||||||||| || ||||| |||| |||||||| || |||| | ||||||||||||| Sbjct 583 TCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCT 524 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 |||||| |||||| | ||| ||||| | || ||||| || | ||||| || Sbjct 523 TGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGTAATGGTC 464 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || ||||| || ||||| || ||||| Sbjct 463 TTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || ||||| |||| ||| |||||||||||||| |||||| | ||| | |||| Sbjct 871 AATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTCAATGTTCTACCATCT 812 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||||||||| || ||||| ||||| ||||| || || | || | ||||||||||||| Sbjct 811 TCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTATCT 752 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 |||||| |||||| | ||| ||||| | || || || || | ||||| ||| Sbjct 751 TGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTT 692 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || || || || || || || || |||||| Sbjct 691 TTTCCAGTCAATGTTTTAACGAAAATCTGCATG 659 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 |||||||| |||| ||| |||||||| |||||||||||| | | || |||| Sbjct 415 AACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCT 356 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||||||||| || ||||| ||||| ||||| || || | || | ||||||||| || Sbjct 355 TCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCC 296 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||||| |||||| | ||| |||||| | || || || || | || |||||| Sbjct 295 TGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTGATTGTT 236 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || || || ||||| || || ||||| Sbjct 235 TTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204 Score = 95.1 bits (104), Expect = 9e-15 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 ||||||||||| | ||| ||||| || ||||| |||||| | ||| | |||| Sbjct 187 AACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTCAATGTTCTACCATCT 128 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||||||||| || || || ||||| ||||| || || | || | ||||||||| ||| Sbjct 127 TCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCT 68 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 |||||| |||||| | ||| ||||| | || ||||| || | || || ||| Sbjct 67 TGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGTTCCACTTCCAAAGTGATAGTT 8 Query 44090 TTACC 44094 || || Sbjct 7 TTTCC 3 >seq4581 Length=275 Score = 86.0 bits (94), Expect = 4e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || |||||||| | || ||||| ||||| ||||||||| | ||| | |||| Sbjct 136 AATACCAAATGCAAAGTTGATTCTTTCTGAATGTTATAATCGCTCAATGTTCTACCATCT 195 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||||||||| || ||||| || | |||||||| || |||| | ||||||||||||| Sbjct 196 TCCAATTGTTTGCCAGCAAAAATTAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCT 255 Query 44030 GAAATTTTTTGTTTGAC 44046 ||||| |||||| Sbjct 256 TGGATTTTAGCTTTGAC 272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354696052151280