Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq718 131 1e-25
seq135 125 5e-24
seq4581 86.0 4e-12
>seq718
Length=674
Score = 131 bits (144), Expect = 1e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969
||||||||||| | ||| |||||||| |||||||||||| | | || ||||
Sbjct 257 AACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCT 198
Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029
||||||||||| || || || ||||| ||||| || || |||| | ||||||||| |||
Sbjct 197 TCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTGTCT 138
Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089
|||||| |||||| | ||| ||||| | ||||| || || | ||||| |||
Sbjct 137 TGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAACTTCCAAAGTAATGGTT 78
Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| || || ||||| ||||| || || |||||
Sbjct 77 TTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46
Score = 107 bits (118), Expect = 1e-18
Identities = 118/157 (75%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024
|||| ||||||||||| || || || ||||| ||||| || || | || | ||||||||
Sbjct 665 CATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTT 606
Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084
||||| |||||| |||||| | ||| |||||| | ||||| || || | || |
Sbjct 605 TATCTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGCTCAACTTCCAAAGTGA 546
Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
| ||||| || || ||||| ||||| || ||||||||
Sbjct 545 TAGTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 509
Score = 91.5 bits (100), Expect = 1e-13
Identities = 153/219 (70%), Gaps = 7/219 (3%)
Strand=Plus/Minus
Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAA--TT--GA---CG 43962
|||||||| || | || |||||||| |||||||||||| | | || || ||
Sbjct 492 AACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCNGAGTTCG 433
Query 43963 CTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTC 44022
|||| ||||||||||| || || || ||||| ||||| || || | || | ||||||
Sbjct 432 ACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTC 373
Query 44023 TTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGT 44082
||| || ||||| |||||| | ||| ||||| | || || || || | ||
Sbjct 372 TTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGAAGGTTCAACTTCCAAAGT 313
Query 44083 AATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|||||||| || || ||||| || || || || |||||
Sbjct 312 GATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274
>seq135
Length=1279
Score = 125 bits (138), Expect = 5e-24
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969
|||||||| || | || |||||||| |||||||||||| | | || ||||
Sbjct 643 AACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCT 584
Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029
||||||||||| || ||||| |||| |||||||| || |||| | |||||||||||||
Sbjct 583 TCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCT 524
Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089
|||||| |||||| | ||| ||||| | || ||||| || | ||||| ||
Sbjct 523 TGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGTAATGGTC 464
Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| || || ||||| || ||||| || |||||
Sbjct 463 TTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432
Score = 123 bits (136), Expect = 2e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969
|| ||||| |||| ||| |||||||||||||| |||||| | ||| | ||||
Sbjct 871 AATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTCAATGTTCTACCATCT 812
Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029
||||||||||| || ||||| ||||| ||||| || || | || | |||||||||||||
Sbjct 811 TCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTATCT 752
Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089
|||||| |||||| | ||| ||||| | || || || || | ||||| |||
Sbjct 751 TGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTT 692
Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122
|| || || || || || || || || ||||||
Sbjct 691 TTTCCAGTCAATGTTTTAACGAAAATCTGCATG 659
Score = 116 bits (128), Expect = 3e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969
|||||||| |||| ||| |||||||| |||||||||||| | | || ||||
Sbjct 415 AACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCT 356
Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029
||||||||||| || ||||| ||||| ||||| || || | || | ||||||||| ||
Sbjct 355 TCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCC 296
Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089
||||| |||||| | ||| |||||| | || || || || | || ||||||
Sbjct 295 TGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTGATTGTT 236
Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| || || || || ||||| || || |||||
Sbjct 235 TTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204
Score = 95.1 bits (104), Expect = 9e-15
Identities = 132/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969
||||||||||| | ||| ||||| || ||||| |||||| | ||| | ||||
Sbjct 187 AACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTCAATGTTCTACCATCT 128
Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029
||||||||||| || || || ||||| ||||| || || | || | ||||||||| |||
Sbjct 127 TCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCT 68
Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089
|||||| |||||| | ||| ||||| | || ||||| || | || || |||
Sbjct 67 TGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGTTCCACTTCCAAAGTGATAGTT 8
Query 44090 TTACC 44094
|| ||
Sbjct 7 TTTCC 3
>seq4581
Length=275
Score = 86.0 bits (94), Expect = 4e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969
|| |||||||| | || ||||| ||||| ||||||||| | ||| | ||||
Sbjct 136 AATACCAAATGCAAAGTTGATTCTTTCTGAATGTTATAATCGCTCAATGTTCTACCATCT 195
Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029
||||||||||| || ||||| || | |||||||| || |||| | |||||||||||||
Sbjct 196 TCCAATTGTTTGCCAGCAAAAATTAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCT 255
Query 44030 GAAATTTTTTGTTTGAC 44046
||||| ||||||
Sbjct 256 TGGATTTTAGCTTTGAC 272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354696052151280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |