Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq135 141 8e-29 seq718 123 2e-23 seq4581 86.0 5e-12 >seq135 Length=1279 Score = 141 bits (156), Expect = 8e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||||||||| || | |||||||||||||| || || ||||||| | |||| | ||| Sbjct 644 CAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATC 585 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||||||||||||| ||| |||| || | || ||||| || | |||||||| || Sbjct 584 TTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTCTTTATC 525 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 |||||| ||| || | ||| | |||| ||||||| ||||| |||||||| Sbjct 524 TTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGTAATGGT 465 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || ||||| |||||||||||||| ||||| Sbjct 464 CTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||| ||||| |||| || ||||||||||| || |||||||||| || ||| || ||| Sbjct 872 CAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTCAATGTTCTACCATC 813 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||||||||||||| ||| |||| | | |||||||| || | |||||||| || Sbjct 812 TTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTATC 753 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 |||||| ||| || | ||| | |||| |||||| ||||| |||||||| Sbjct 752 TTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGT 693 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| || ||||| ||||| || ||||| ||||| Sbjct 692 TTTTCCAGTCAATGTTTTAACGAAAATCTGCAT 660 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||||||||| |||| || ||||||||||| || || ||||||| | |||| | ||| Sbjct 416 CAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATC 357 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 |||||||||||| || ||| |||| | | |||||||| || | ||||||||||| Sbjct 356 TTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTC 297 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 ||||| ||| || | ||| || |||| |||||| ||||| || || || Sbjct 296 CTGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTGATTGT 237 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| || ||||| ||||| || ||||| ||||| Sbjct 236 TTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204 Score = 102 bits (112), Expect = 7e-17 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 |||||||||||| | || |||||||| || || |||||||||| || ||| || ||| Sbjct 188 CAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTCAATGTTCTACCATC 129 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 |||||||||||| || || |||| | | |||||||| || | ||||||||||| Sbjct 128 TTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTC 69 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 |||||| ||| || | ||| | |||| ||||||| ||||| || || || Sbjct 68 TTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGTTCCACTTCCAAAGTGATAGT 9 Query 20176 TTTGCC 20181 ||| || Sbjct 8 TTTTCC 3 >seq718 Length=674 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 |||||||||||| | || ||||||||||| || || ||||||| | |||| | ||| Sbjct 258 CAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATC 199 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 |||||||||||| || || |||| | | |||||||| || | ||||||||||| Sbjct 198 TTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTGTC 139 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 |||||| ||| || | ||| | |||| ||| || ||||| |||||||| Sbjct 138 TTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAACTTCCAAAGTAATGGT 79 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| || ||||| ||||| || ||||| ||||| Sbjct 78 TTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46 Score = 111 bits (122), Expect = 1e-19 Identities = 157/220 (71%), Gaps = 7/220 (3%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTT-----TTA 20050 ||||||||| || | |||||||||||||| || || ||||||| | |||| || Sbjct 493 CAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCNGAGTTC 434 Query 20051 GA--ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTT 20108 || |||||||||||||||||| || |||| | | |||||||| || | |||| Sbjct 433 GACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTT 374 Query 20109 CTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGG 20168 ||||||| ||||| ||| || | ||| | |||| |||||| ||||| | Sbjct 373 CTTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGAAGGTTCAACTTCCAAAG 314 Query 20169 TAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | || ||||| || ||||| ||||| || ||||| ||||| Sbjct 313 TGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 20053 ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTT 20112 |||||||||||||||||| || |||| | | |||||||| || | |||||||| Sbjct 664 ATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTT 605 Query 20113 GTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAAT 20172 || |||||| ||| || | ||| || |||| ||| || ||||| || || Sbjct 604 ATCTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGCTCAACTTCCAAAGTGAT 545 Query 20173 GGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| || ||||| ||||| || ||||||||||| Sbjct 544 AGTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 509 >seq4581 Length=275 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||| |||||||| | || |||||||| || ||||| ||||||| || ||| || ||| Sbjct 135 CAATACCAAATGCAAAGTTGATTCTTTCTGAATGTTATAATCGCTCAATGTTCTACCATC 194 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||||||||||||| ||| |||| || | || ||||| || | |||||||| || Sbjct 195 TTCCAATTGTTTGCCAGCAAAAATTAGACGTTGCTGATCTGGAGGAATACCTTCTTTATC 254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419490755259660