Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq4298 215 4e-51 >seq4298 Length=5336 Score = 215 bits (238), Expect = 4e-51 Identities = 586/883 (66%), Gaps = 18/883 (2%) Strand=Plus/Minus Query 12858 TTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATAT 12917 ||||||||||||| ||| | |||||| ||||| || ||||| || || || || || | Sbjct 2288 TTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAAGAGATCT 2229 Query 12918 TTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTA-CACCCTAATTCTAGT 12976 |||||| ||| ||| |||||||| | | || |||| | || || | || | Sbjct 2228 GTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCC-AGCTCGACC 2170 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 ||||| | ||||| | || ||||||| |||| ||| | || ||||| || Sbjct 2169 AACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGATTCCGATC 2110 Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096 || ||||||| || || || ||||| | || || || || || |||| | | || Sbjct 2109 AAGGAGACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCTTTGGTGACA 2050 Query 13097 ATGTCTCTTATTACGTTCTCTAATGGAGGAT--TTGATAGATGCTTA--AACATCATACA 13152 || | | | | ||| | | ||| |||| |||| | || | || ||| Sbjct 2049 ATCT---TCAAGATCTTCACCCGAGAAGGTCGATTGAC-GATGTGTCGGAAAAGCAAACA 1994 Query 13153 TGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTT--TGAAAATGTTAGA 13210 ||||||||||| || | ||||||||| | || | || || ||||| || | Sbjct 1993 AGCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAA--GTCAAG 1936 Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaT 13270 || ||||| || ||||||||||||| |||||| ||||| |||||||| || || ||||| Sbjct 1935 CCAGGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAAAAG 1876 Query 13271 ATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCT 13330 |||||||| || || || ||||| | | | |||| || | || | | | ||| Sbjct 1875 ATTCCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCA-TCTTG 1817 Query 13331 A-TCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTT 13389 | |||| | | ||||| || ||||| | | || || || ||| || || || Sbjct 1816 AGTCCATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGCATT 1757 Query 13390 AAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACAT 13449 || | | ||| | | || | | ||| ||||| |||| || | || |||||| Sbjct 1756 GAAAAGAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGAATACAT 1697 Query 13450 TTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATAC 13509 ||| || ||||||||||| || || || || || ||||||||||||| |||||||| || Sbjct 1696 TTCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGGTAT 1637 Query 13510 CTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAG 13568 |||||| || || | ||| | || |||| || || |||||||| || ||||| |||| Sbjct 1636 CTGAACATCACGAATGAAA-CGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGCAG 1578 Query 13569 CaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAAT 13628 |||| || || | | || || || | |||||| || | |||| ||||| Sbjct 1577 CAAAGAATGCTAACACATGAGAGATGAAATGTTTTTCATTCTTATTCAACGAGTTCCAAT 1518 Query 13629 CTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCT 13688 | ||| |||||| || || || || |||||||| || || | || |||| Sbjct 1517 GATCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCTTTCT 1458 Query 13689 TATACATCATCCATATATCCTTATAAACAATGGGAAACACAAC 13731 | |||||| ||| ||||| || || ||| ||||||| ||| Sbjct 1457 TGTACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAAC 1415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430883336001720