Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq4298 178 3e-39
seq135 178 3e-39
seq718 134 3e-26
seq4581 118 2e-21
seq620 95.1 3e-14
>seq4298
Length=5336
Score = 178 bits (196), Expect = 3e-39
Identities = 404/598 (68%), Gaps = 15/598 (3%)
Strand=Plus/Plus
Query 268698 ATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCG 268757
|| ||||||| | |||||||| || | ||||| ||| ||||||||| | || |
Sbjct 1407 ATCGATTTGTTTTGTTTCCAATTCAATACAAAGATATCTGGGAGATGTACAAGAAAGCGG 1466
Query 268758 TTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAA 268817
|| || |||||||| || |||||||| ||| | | || || |||||||
Sbjct 1467 AGGCATCGTTTTGGACAGTCGAAGAAGTCGATTTAAGTCGCGATCTAGATCATTGGAACT 1526
Query 268818 ATTTAAAACCAGAAGAAAGAAGATTT-ATATCTTATATTCTTGCGTTTTTTGCAGTTAGT 268876
|| || |||| || || |||| || ||| || | | || || ||||| | |||
Sbjct 1527 CGTTGAATA-AGAATGAAAAACATTTCATCTCTCATGTGTTAGCATTCTTTGCTGCAAGT 1585
Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936
||||| || ||||| || ||||||| ||| ||| || || || ||||| || ||
Sbjct 1586 GATGGAATAGTTAATGAGAATCTAGCTGAGCGTTTCATTCGTGATGTTCAGATACCAGAG 1645
Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996
|| |||||||||| ||||| ||||| || || ||||||||||| || || |||||
Sbjct 1646 GCTCGATGTTTTTATGGATTTCAGATCGCCATCGAAAATATTCACTCTGAAATGTATTCG 1705
Query 268997 CTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTC--TTCTA 269054
| | || |||| |||||| | ||||| | || | | | | ||||| | | |
Sbjct 1706 TTGCTCATCAATACCTATATAAAAGATAAATATGAGA--GAGATTTTCTTTTCAATGCCA 1763
Query 269055 TGAGAACTATGGACTGTGT-GAGaaaaaaaTCTGAATGGGCTCTGAAATGGA---TAAAC 269110
| ||| || ||||| ||| || ||| | |||||||| | | ||||| | |
Sbjct 1764 TTCAAACATTGCCTTGTGTCGAG-AAGAAAGCGAAATGGGCTATCAGATGGACTCAAGAT 1822
Query 269111 GATAGCG--CGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCT 269168
||||| | || || | ||| | | ||||| || || || || ||||| || || |
Sbjct 1823 GATAGAGTTAGCTTT--GCTGAACGTCTTGTTGCGTTCGCTGCCGTCGAAGGAATCTTTT 1880
Query 269169 TTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAA 269228
| || || || ||||| |||||||||||| | || ||| |||| || ||||| || || |
Sbjct 1881 TCTCTGGCTCGTTTGCGGCTATCTTTTGGCTTAAAAAACGAGGACTGATGCCTGGCTTGA 1940
Query 269229 CTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTT 269286
||||| ||| |||||||| | || ||||| | || || || || ||||||||
Sbjct 1941 CTTTCAGTAATGAATTGATCTCGCGTGATGAAGGACTTCATTGTGATTTTGCTTGTTT 1998
>seq135
Length=1279
Score = 178 bits (196), Expect = 3e-39
Identities = 161/203 (79%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416
|| || ||||||||||| || |||||||| || ||||||| ||| ||||| | ||||
Sbjct 634 TGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCTTCCAATTGT 575
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||||||||| || | || ||||| ||||| || ||||||||||| ||||| ||
Sbjct 574 TTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCTTGAATTTTA 515
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
||||| |||||||| | ||||||| |||||| || || | ||||| ||||| |||||
Sbjct 514 GCTTTGACATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGTAATGGTCTTTCCAGTC 455
Query 104537 AGTGTTTTTACAAATATCTGCAT 104559
| ||||| ||||| ||||||||
Sbjct 454 AAAGTTTTGACAAAAATCTGCAT 432
Score = 163 bits (180), Expect = 7e-35
Identities = 158/203 (78%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416
||||| || |||||||| |||||||| || || | |||||||| ||||| | ||||
Sbjct 862 TGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTCAATGTTCTACCATCTTCCAATTGT 803
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||||||||| | | |||||||| || || || ||||||||||| ||||| ||
Sbjct 802 TTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTGAATTTTA 743
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
||||| |||||||| | ||||||| |||||| || || | ||||| || || |||||
Sbjct 742 GCTTTGACATTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTC 683
Query 104537 AGTGTTTTTACAAATATCTGCAT 104559
| |||||| || || ||||||||
Sbjct 682 AATGTTTTAACGAAAATCTGCAT 660
Score = 154 bits (170), Expect = 3e-32
Identities = 156/203 (77%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416
||||| || |||||||| || |||||||| || ||||||| ||| ||||| | ||||
Sbjct 406 TGTAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCTTCCAATTGT 347
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||||||||| | | |||||||| || || || |||||||| ||||| || ||
Sbjct 346 TTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGTATTTTA 287
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
||||| |||||||| | |||||| |||||| || || | || || || || |||||
Sbjct 286 GCTTTGACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTGATTGTTTTTCCAGTC 227
Query 104537 AGTGTTTTTACAAATATCTGCAT 104559
| |||||| || || ||||||||
Sbjct 226 AATGTTTTCACGAAAATCTGCAT 204
Score = 125 bits (138), Expect = 2e-23
Identities = 135/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415
||| || || ||||||||||| ||||| || || | |||||||| ||||| | |||
Sbjct 179 ATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTCAATGTTCTACCATCTTCCAATTG 120
Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475
||| ||||| ||||| | | |||||||| || || || |||||||| || ||||| ||
Sbjct 119 TTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGAATTTT 60
Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAG 104534
||||| |||||||| | |||||| |||||| || || | || ||||| || ||||
Sbjct 59 AGCTTTGACATTTTCAATCGTATCGGAAGGTTCCACTTCCAAAGTGATAGTTTTTCCAG 1
>seq718
Length=674
Score = 134 bits (148), Expect = 3e-26
Identities = 156/210 (74%), Gaps = 7/210 (3%)
Strand=Plus/Minus
Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTC----AGA---TAGAGTTCTACCGTCTTC 104409
|| || ||||||||||| || |||||||| || ||| |||||| ||| |||||
Sbjct 483 TGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCNGAGTTCGACCATCTTC 424
Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469
| |||||| ||||| ||||| | | |||||||| || || || |||||||| |||||
Sbjct 423 CAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTG 364
Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529
|| || ||||| |||||||| | |||||| |||||| || || | || || || ||
Sbjct 363 TATTTTAGCTTTGACATTTTCAATTGTATCGGAAGGTTCAACTTCCAAAGTGATTGTTTT 304
Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| | ||||| || || ||||||||
Sbjct 303 TCCAGTCAAAGTTTTAACGAAAATCTGCAT 274
Score = 120 bits (132), Expect = 7e-22
Identities = 126/166 (76%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 104394 GAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTA 104453
|||||| ||| ||||| | |||||| ||||| ||||| | | |||||||| || || |
Sbjct 674 GAGTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAA 615
Query 104454 TTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCT 104513
| ||||||||||| ||||| || ||||| |||||||| | |||||| ||| || || |
Sbjct 614 TACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGCTCAACTT 555
Query 104514 CTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
| | || ||||| || ||||| | ||||| || || || |||||
Sbjct 554 CCAAAGTGATAGTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 509
>seq4581
Length=275
Score = 118 bits (130), Expect = 2e-21
Identities = 109/138 (79%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409
||| | ||| || || |||||||||||||| ||||| || | |||||||| |||||
Sbjct 138 TACCAAATGCAAAGTTGATTCTTTCTGAATGTTATAATCGCTCAATGTTCTACCATCTTC 197
Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469
| |||||| |||||||||||||| | || ||||| ||||| || ||||||||||| ||
Sbjct 198 CAATTGTTTGCCAGCAAAAATTAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCTTG 257
Query 104470 AATCTTTGCTTTTACATT 104487
|| || ||||| |||||
Sbjct 258 GATTTTAGCTTTGACATT 275
>seq620
Length=8710
Score = 95.1 bits (104), Expect = 3e-14
Identities = 85/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
|| ||||||||||| ||||| || ||||| |||||||| | ||||||| |||||| ||
Sbjct 8708 ATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACT 8649
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| | || ||||| || ||||| | ||||| ||||| ||||||||
Sbjct 8648 TCCAAAGTGATAGTTTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 8602
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151120171772880
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