Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4298 178 3e-39 seq135 178 3e-39 seq718 134 3e-26 seq4581 118 2e-21 seq620 95.1 3e-14 >seq4298 Length=5336 Score = 178 bits (196), Expect = 3e-39 Identities = 404/598 (68%), Gaps = 15/598 (3%) Strand=Plus/Plus Query 268698 ATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCG 268757 || ||||||| | |||||||| || | ||||| ||| ||||||||| | || | Sbjct 1407 ATCGATTTGTTTTGTTTCCAATTCAATACAAAGATATCTGGGAGATGTACAAGAAAGCGG 1466 Query 268758 TTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAA 268817 || || |||||||| || |||||||| ||| | | || || ||||||| Sbjct 1467 AGGCATCGTTTTGGACAGTCGAAGAAGTCGATTTAAGTCGCGATCTAGATCATTGGAACT 1526 Query 268818 ATTTAAAACCAGAAGAAAGAAGATTT-ATATCTTATATTCTTGCGTTTTTTGCAGTTAGT 268876 || || |||| || || |||| || ||| || | | || || ||||| | ||| Sbjct 1527 CGTTGAATA-AGAATGAAAAACATTTCATCTCTCATGTGTTAGCATTCTTTGCTGCAAGT 1585 Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936 ||||| || ||||| || ||||||| ||| ||| || || || ||||| || || Sbjct 1586 GATGGAATAGTTAATGAGAATCTAGCTGAGCGTTTCATTCGTGATGTTCAGATACCAGAG 1645 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 || |||||||||| ||||| ||||| || || ||||||||||| || || ||||| Sbjct 1646 GCTCGATGTTTTTATGGATTTCAGATCGCCATCGAAAATATTCACTCTGAAATGTATTCG 1705 Query 268997 CTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTC--TTCTA 269054 | | || |||| |||||| | ||||| | || | | | | ||||| | | | Sbjct 1706 TTGCTCATCAATACCTATATAAAAGATAAATATGAGA--GAGATTTTCTTTTCAATGCCA 1763 Query 269055 TGAGAACTATGGACTGTGT-GAGaaaaaaaTCTGAATGGGCTCTGAAATGGA---TAAAC 269110 | ||| || ||||| ||| || ||| | |||||||| | | ||||| | | Sbjct 1764 TTCAAACATTGCCTTGTGTCGAG-AAGAAAGCGAAATGGGCTATCAGATGGACTCAAGAT 1822 Query 269111 GATAGCG--CGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCT 269168 ||||| | || || | ||| | | ||||| || || || || ||||| || || | Sbjct 1823 GATAGAGTTAGCTTT--GCTGAACGTCTTGTTGCGTTCGCTGCCGTCGAAGGAATCTTTT 1880 Query 269169 TTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAA 269228 | || || || ||||| |||||||||||| | || ||| |||| || ||||| || || | Sbjct 1881 TCTCTGGCTCGTTTGCGGCTATCTTTTGGCTTAAAAAACGAGGACTGATGCCTGGCTTGA 1940 Query 269229 CTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTT 269286 ||||| ||| |||||||| | || ||||| | || || || || |||||||| Sbjct 1941 CTTTCAGTAATGAATTGATCTCGCGTGATGAAGGACTTCATTGTGATTTTGCTTGTTT 1998 >seq135 Length=1279 Score = 178 bits (196), Expect = 3e-39 Identities = 161/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || ||||||||||| || |||||||| || ||||||| ||| ||||| | |||| Sbjct 634 TGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCTTCCAATTGT 575 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| || | || ||||| ||||| || ||||||||||| ||||| || Sbjct 574 TTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCTTGAATTTTA 515 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| |||||||| | ||||||| |||||| || || | ||||| ||||| ||||| Sbjct 514 GCTTTGACATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGTAATGGTCTTTCCAGTC 455 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 | ||||| ||||| |||||||| Sbjct 454 AAAGTTTTGACAAAAATCTGCAT 432 Score = 163 bits (180), Expect = 7e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 ||||| || |||||||| |||||||| || || | |||||||| ||||| | |||| Sbjct 862 TGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTCAATGTTCTACCATCTTCCAATTGT 803 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| | | |||||||| || || || ||||||||||| ||||| || Sbjct 802 TTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTGAATTTTA 743 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| |||||||| | ||||||| |||||| || || | ||||| || || ||||| Sbjct 742 GCTTTGACATTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTC 683 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 | |||||| || || |||||||| Sbjct 682 AATGTTTTAACGAAAATCTGCAT 660 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 ||||| || |||||||| || |||||||| || ||||||| ||| ||||| | |||| Sbjct 406 TGTAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCTTCCAATTGT 347 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| | | |||||||| || || || |||||||| ||||| || || Sbjct 346 TTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGTATTTTA 287 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| |||||||| | |||||| |||||| || || | || || || || ||||| Sbjct 286 GCTTTGACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTGATTGTTTTTCCAGTC 227 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 | |||||| || || |||||||| Sbjct 226 AATGTTTTCACGAAAATCTGCAT 204 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415 ||| || || ||||||||||| ||||| || || | |||||||| ||||| | ||| Sbjct 179 ATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTCAATGTTCTACCATCTTCCAATTG 120 Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 ||| ||||| ||||| | | |||||||| || || || |||||||| || ||||| || Sbjct 119 TTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGAATTTT 60 Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAG 104534 ||||| |||||||| | |||||| |||||| || || | || ||||| || |||| Sbjct 59 AGCTTTGACATTTTCAATCGTATCGGAAGGTTCCACTTCCAAAGTGATAGTTTTTCCAG 1 >seq718 Length=674 Score = 134 bits (148), Expect = 3e-26 Identities = 156/210 (74%), Gaps = 7/210 (3%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTC----AGA---TAGAGTTCTACCGTCTTC 104409 || || ||||||||||| || |||||||| || ||| |||||| ||| ||||| Sbjct 483 TGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCNGAGTTCGACCATCTTC 424 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 | |||||| ||||| ||||| | | |||||||| || || || |||||||| ||||| Sbjct 423 CAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTG 364 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 || || ||||| |||||||| | |||||| |||||| || || | || || || || Sbjct 363 TATTTTAGCTTTGACATTTTCAATTGTATCGGAAGGTTCAACTTCCAAAGTGATTGTTTT 304 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | ||||| || || |||||||| Sbjct 303 TCCAGTCAAAGTTTTAACGAAAATCTGCAT 274 Score = 120 bits (132), Expect = 7e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 104394 GAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTA 104453 |||||| ||| ||||| | |||||| ||||| ||||| | | |||||||| || || | Sbjct 674 GAGTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAA 615 Query 104454 TTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCT 104513 | ||||||||||| ||||| || ||||| |||||||| | |||||| ||| || || | Sbjct 614 TACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGCTCAACTT 555 Query 104514 CTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | | || ||||| || ||||| | ||||| || || || ||||| Sbjct 554 CCAAAGTGATAGTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 509 >seq4581 Length=275 Score = 118 bits (130), Expect = 2e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| | ||| || || |||||||||||||| ||||| || | |||||||| ||||| Sbjct 138 TACCAAATGCAAAGTTGATTCTTTCTGAATGTTATAATCGCTCAATGTTCTACCATCTTC 197 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 | |||||| |||||||||||||| | || ||||| ||||| || ||||||||||| || Sbjct 198 CAATTGTTTGCCAGCAAAAATTAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCTTG 257 Query 104470 AATCTTTGCTTTTACATT 104487 || || ||||| ||||| Sbjct 258 GATTTTAGCTTTGACATT 275 >seq620 Length=8710 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||||||||| ||||| || ||||| |||||||| | ||||||| |||||| || Sbjct 8708 ATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACT 8649 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || | || ||||| || ||||| | ||||| ||||| |||||||| Sbjct 8648 TCCAAAGTGATAGTTTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 8602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151120171772880