Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq135 152 5e-32 seq718 149 6e-31 seq4581 118 1e-21 >seq135 Length=1279 Score = 152 bits (168), Expect = 5e-32 Identities = 165/217 (76%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 |||||||||||||||||||||||||| ||||| | ||||||||||| | ||| | || Sbjct 646 CGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGT--TCGAC 589 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||| ||||| || |||| || | | |||||||||||||||||||||||||| Sbjct 588 CATCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTCTT 529 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | |||||| || ||||| | | || || | | || || || | || | Sbjct 528 TATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGTAA 469 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| | |||||| ||||| |||||||| Sbjct 468 TGGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432 Score = 143 bits (158), Expect = 2e-29 Identities = 163/217 (75%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 |||||||||||||| ||||| ||||| ||||| | ||||||||||| | ||| | || Sbjct 418 CGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGT--TCGAC 361 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||| ||||| || |||| || || | ||| |||||||| ||||||||||||| Sbjct 360 CATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTT 301 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | ||||| || ||||| | | ||| || | | || || || | |||| Sbjct 300 TGTCCTGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTGA 241 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||||||||| | |||||||| || |||||||| Sbjct 240 TTGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204 Score = 131 bits (144), Expect = 2e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| |||||||| ||||| ||||| ||||| | || |||||||||| || | | Sbjct 874 CGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTCAATGTTCTACCA 815 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||||| || |||| || || | ||| |||||||| |||||||||||||| Sbjct 814 TCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTA 755 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||| || ||||| | | || || | | || || || | || ||| Sbjct 754 TCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAATG 695 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||||||||| | ||||| || || |||||||||| Sbjct 694 GTTTTTCCAGTCAATGTTTTAACGAAAATCTGCATGC 658 Score = 111 bits (122), Expect = 1e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 |||||||||||| |||||||| ||||| || || | || |||||||||| || | Sbjct 191 TCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTCAATGTTCTACC 132 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| ||||| || | || || || | ||| |||||||| |||||||||||||| Sbjct 131 ATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTT 72 Query 94912 GTCATAAATTTTTGCCTTGAC 94932 ||| | |||||| || ||||| Sbjct 71 GTCTTGAATTTTAGCTTTGAC 51 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || || | | |||||||||||| |||||||| ||||| || || | Sbjct 1177 AAAATTTGCATACCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATA 1118 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || |||||||||| || || ||| |||| ||||| || |||| || || | |||| Sbjct 1117 TTGTAATCGCTCAATGTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGC 1058 Query 94889 TGATCTGGAGGAATACCT 94906 |||||||| ||||||||| Sbjct 1057 TGATCTGGCGGAATACCT 1040 >seq718 Length=674 Score = 149 bits (164), Expect = 6e-31 Identities = 165/218 (76%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 |||||||||||| |||||||| ||||| ||||| | ||||||||||| | ||| | || Sbjct 261 TCGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGT--TCGA 204 Query 94852 --ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCT 94909 ||| |||| ||||| || | || || || | ||| ||||||||||||||||||||| Sbjct 203 CCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCT 144 Query 94910 TTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTG 94969 ||||| | |||||| || ||||| | | || || | | || || || | || Sbjct 143 TTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAACTTCCAAAGTA 84 Query 94970 ATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||||||| | ||||||||| || |||||||| Sbjct 83 ATGGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46 Score = 141 bits (156), Expect = 8e-29 Identities = 165/222 (74%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT-----GT 94847 |||||||||||||||||||||||||| ||||| | ||||||||||| | ||| || Sbjct 495 CGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCNGAGT 436 Query 94848 TGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACC 94905 | || ||| |||| ||||| || | || || || | ||| |||||||| |||||||| Sbjct 435 TCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACC 376 Query 94906 TTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAAT 94965 ||||||||| | ||||| || ||||| | | || || | | || || || | Sbjct 375 TTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGAAGGTTCAACTTCCAA 316 Query 94966 CGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||||||||| | |||||| || || |||||||| Sbjct 315 AGTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| ||||| || | || || || | ||| |||||||| |||||||||||||| Sbjct 664 ATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTT 605 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | |||||| || ||||| | | ||| || | | || || || | ||||| Sbjct 604 ATCTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGCTCAACTTCCAAAGTGAT 545 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||||||| | ||||||||| || || ||||| Sbjct 544 AGTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 509 >seq4581 Length=275 Score = 118 bits (130), Expect = 1e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| ||||| |||||||| ||||| || || | |||||||||||||| || | | Sbjct 133 CGCAATACCAAATGCAAAGTTGATTCTTTCTGAATGTTATAATCGCTCAATGTTCTACCA 192 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||||| || |||| |||| | ||||||||||||||||||||||||||| Sbjct 193 TCTTCCAATTGTTTGCCAGCAAAAATTAGACGTTGCTGATCTGGAGGAATACCTTCTTTA 252 Query 94913 TCATAAATTTTTGCCTTGAC 94932 || | ||||| || ||||| Sbjct 253 TCTTGGATTTTAGCTTTGAC 272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448185515349600