Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq135 152 5e-32
seq718 149 6e-31
seq4581 118 1e-21
>seq135
Length=1279
Score = 152 bits (168), Expect = 5e-32
Identities = 165/217 (76%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851
|||||||||||||||||||||||||| ||||| | ||||||||||| | ||| | ||
Sbjct 646 CGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGT--TCGAC 589
Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910
||| |||| ||||| || |||| || | | ||||||||||||||||||||||||||
Sbjct 588 CATCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTCTT 529
Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970
| || | |||||| || ||||| | | || || | | || || || | || |
Sbjct 528 TATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGTAA 469
Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||| |||||||| | |||||| ||||| ||||||||
Sbjct 468 TGGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432
Score = 143 bits (158), Expect = 2e-29
Identities = 163/217 (75%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851
|||||||||||||| ||||| ||||| ||||| | ||||||||||| | ||| | ||
Sbjct 418 CGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGT--TCGAC 361
Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910
||| |||| ||||| || |||| || || | ||| |||||||| |||||||||||||
Sbjct 360 CATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTT 301
Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970
|||| | ||||| || ||||| | | ||| || | | || || || | ||||
Sbjct 300 TGTCCTGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTGA 241
Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| ||||||||||| | |||||||| || ||||||||
Sbjct 240 TTGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204
Score = 131 bits (144), Expect = 2e-25
Identities = 159/217 (73%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
||||| |||||||| ||||| ||||| ||||| | || |||||||||| || | |
Sbjct 874 CGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTCAATGTTCTACCA 815
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
|| |||| ||||| || |||| || || | ||| |||||||| ||||||||||||||
Sbjct 814 TCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTA 755
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | |||||| || ||||| | | || || | | || || || | || |||
Sbjct 754 TCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAATG 695
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
||||||||||| | ||||| || || ||||||||||
Sbjct 694 GTTTTTCCAGTCAATGTTTTAACGAAAATCTGCATGC 658
Score = 111 bits (122), Expect = 1e-19
Identities = 109/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851
|||||||||||| |||||||| ||||| || || | || |||||||||| || |
Sbjct 191 TCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTCAATGTTCTACC 132
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| |||| ||||| || | || || || | ||| |||||||| ||||||||||||||
Sbjct 131 ATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTT 72
Query 94912 GTCATAAATTTTTGCCTTGAC 94932
||| | |||||| || |||||
Sbjct 71 GTCTTGAATTTTAGCTTTGAC 51
Score = 96.9 bits (106), Expect = 3e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| ||| || || || | | |||||||||||| |||||||| ||||| || || |
Sbjct 1177 AAAATTTGCATACCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATA 1118
Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888
|| |||||||||| || || ||| |||| ||||| || |||| || || | ||||
Sbjct 1117 TTGTAATCGCTCAATGTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGC 1058
Query 94889 TGATCTGGAGGAATACCT 94906
|||||||| |||||||||
Sbjct 1057 TGATCTGGCGGAATACCT 1040
>seq718
Length=674
Score = 149 bits (164), Expect = 6e-31
Identities = 165/218 (76%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851
|||||||||||| |||||||| ||||| ||||| | ||||||||||| | ||| | ||
Sbjct 261 TCGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGT--TCGA 204
Query 94852 --ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCT 94909
||| |||| ||||| || | || || || | ||| |||||||||||||||||||||
Sbjct 203 CCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCT 144
Query 94910 TTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTG 94969
||||| | |||||| || ||||| | | || || | | || || || | ||
Sbjct 143 TTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAACTTCCAAAGTA 84
Query 94970 ATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||||||||||||| | ||||||||| || ||||||||
Sbjct 83 ATGGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46
Score = 141 bits (156), Expect = 8e-29
Identities = 165/222 (74%), Gaps = 7/222 (3%)
Strand=Plus/Minus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT-----GT 94847
|||||||||||||||||||||||||| ||||| | ||||||||||| | ||| ||
Sbjct 495 CGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCNGAGT 436
Query 94848 TGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACC 94905
| || ||| |||| ||||| || | || || || | ||| |||||||| ||||||||
Sbjct 435 TCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACC 376
Query 94906 TTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAAT 94965
||||||||| | ||||| || ||||| | | || || | | || || || |
Sbjct 375 TTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGAAGGTTCAACTTCCAA 316
Query 94966 CGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| ||||||||||| | |||||| || || ||||||||
Sbjct 315 AGTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274
Score = 93.3 bits (102), Expect = 4e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| |||| ||||| || | || || || | ||| |||||||| ||||||||||||||
Sbjct 664 ATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTT 605
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | |||||| || ||||| | | ||| || | | || || || | |||||
Sbjct 604 ATCTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGCTCAACTTCCAAAGTGAT 545
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||||||||| | ||||||||| || || |||||
Sbjct 544 AGTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 509
>seq4581
Length=275
Score = 118 bits (130), Expect = 1e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
||||| ||||| |||||||| ||||| || || | |||||||||||||| || | |
Sbjct 133 CGCAATACCAAATGCAAAGTTGATTCTTTCTGAATGTTATAATCGCTCAATGTTCTACCA 192
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
|| |||| ||||| || |||| |||| | |||||||||||||||||||||||||||
Sbjct 193 TCTTCCAATTGTTTGCCAGCAAAAATTAGACGTTGCTGATCTGGAGGAATACCTTCTTTA 252
Query 94913 TCATAAATTTTTGCCTTGAC 94932
|| | ||||| || |||||
Sbjct 253 TCTTGGATTTTAGCTTTGAC 272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448185515349600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |