Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq12661 246 5e-61 seq12412 221 2e-53 seq10291 221 2e-53 >seq12661 Length=16680 Score = 246 bits (272), Expect = 5e-61 Identities = 217/271 (80%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | | | | |||||||| || ||||| ||||| |||||||||||| Sbjct 3203 GCGAAACGTCATCGTAAAGTTTTGCGAGATAATATTCAAGGTATCACTAAGCCAGCTATC 3262 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| ||||||| |||||||| || || ||| ||||||| ||| |||| ||||||| | Sbjct 3263 CGTCGTTTGGCTCGCCGTGGTGGCGTGAAACGTATCTCTGGTTTGATCTACGAAGAGACT 3322 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||||||||| |||| | ||| |||||| | || ||| || ||||||||| Sbjct 3323 CGTGGTGTTTTGAAAGTCTTTTTGGAGAACGTTATTCGAGACGCTGTCACATATACCGAG 3382 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||||||||| |||||||||||| | |||||| |||||||||| | ||||||||||| Sbjct 3383 CACGCTAAACGAAAGACTGTCACCGCTATGGATGTCGTCTATGCTCTTAAACGTCAAGGA 3442 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 |||| | ||||| ||||| |||||| || Sbjct 3443 CGTACTTTGTATGGCTTTGGTGGTTAATTTT 3473 >seq12412 Length=4340 Score = 221 bits (244), Expect = 2e-53 Identities = 209/267 (78%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | | ||||||||||||||||| |||||||||||||||||| Sbjct 2203 GCCAAGCGTCATCGAAAAGTATTGCGAGATAACATCCAAGGTATCACCAAGCCAGCTATC 2144 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| |||||||||||||||| ||||| ||| ||||||| | |||||||||| | | Sbjct 2143 CGTCGTTTGGCTCGTCGTGGTGGTGTCAAACGTATCTCTGGTCTAATCTATGAAGAAACT 2084 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | ||| | ||| ||| || | || ||| | |||||| || Sbjct 2083 CGTGGTGTGTTGAAAGTTTTCTTGGAGAACGTCATTCGAGACGCTGTTACCTATACTGAA 2024 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| || || ||||| | |||||| |||| ||||| |||||||| ||||| Sbjct 2023 CACGCCAAACGAAAAACCGTCACTGCTATGGATGTCGTTTATGCTTTGAAACGACAAGGT 1964 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | |||||||| || ||||| Sbjct 1963 CGTACCTTGTATGGTTTCGGTGGTTAA 1937 >seq10291 Length=3275 Score = 221 bits (244), Expect = 2e-53 Identities = 211/270 (78%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | | | ||||||||||||||||| ||||| |||||||||||| Sbjct 2006 GCCAAGCGTCATCGAAAAGTTTTGCGAGATAACATCCAAGGTATCACTAAGCCAGCTATC 2065 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| ||||||||||||| || || || ||| ||||||| | |||||||||| | | Sbjct 2066 CGTCGATTGGCTCGTCGTGGCGGTGTGAAACGTATCTCTGGTCTAATCTATGAAGAAACT 2125 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | ||| | ||| ||| |||| || ||| | |||||| ||| Sbjct 2126 CGTGGTGTGTTGAAAGTTTTCTTGGAGAACGTCATCCGGGACGCTGTTACCTATACTGAG 2185 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| || |||||||| | |||||| |||| ||||| | ||||| |||||| Sbjct 2186 CACGCCAAACGAAAAACTGTCACTGCTATGGATGTCGTATATGCTCTTAAACGACAAGGC 2245 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 |||| | ||||||||||| ||||| || Sbjct 2246 CGTACTTTGTATGGTTTTGGTGGTTAAGCT 2275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79057956169980