Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq8921 205 1e-47 >seq8921 Length=5376 Score = 205 bits (226), Expect = 1e-47 Identities = 271/370 (73%), Gaps = 7/370 (2%) Strand=Plus/Minus Query 193830 ACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTG 193889 || |||| ||| ||||| || |||||| ||||||| ||||||||||| ||| | ||| | Sbjct 3686 ACGCCACAATCCGAAACGACTCCATTTTATCCACGATCTCCTTATGGCGTATCGAAGCTA 3627 Query 193890 TATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGT 193949 | | || | |||| | |||||||| || | || | | |||| ||| Sbjct 3626 TTCGCCTACTCGATCGTTGTTAATTATCGAGAAGCTTACGATATGTTCGCTGTCAATGGG 3567 Query 193950 ATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACA 194009 ||||| |||||||| ||||| || ||||||||||| || ||||| || | || || || Sbjct 3566 ATTCTTTTCAATCATGAATCACCGAGAAGAGGTGAAACGTTTGTGACAAGAAAAATCACT 3507 Query 194010 CAAGGTTTATCTAAGATC--TCT-GTTGGATTACAGAAGATTCTTTATCTTGGTAATCTT 194066 | |||| | | || || ||| | || |||| ||| || || | |||||||||||| Sbjct 3506 CGAGGTGTTGCGAAAATTCATCTAGGTGAATTA--GAATATA-TTGAGCTTGGTAATCTT 3450 Query 194067 AATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTG 194126 || | || |||||||||| |||||||| ||||| |||||||| |||||||| ||| || Sbjct 3449 GATTCCAAACGGGATTGGGGCCACGCAAAAGATTACGTTGAAGCAATGTGGTTGATGATG 3390 Query 194127 CAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGTATTCTGTTAGAGAC 194186 ||||| ||| |||| || |||| ||| ||||| || |||||| |||| || ||||| Sbjct 3389 CAACAAGATCAACCAGAAGATTTTGTCATTGCAACCGGTGAAGCTCATTCAGTCAGAGAA 3330 Query 194187 TTTG-TGAAT 194195 |||| ||||| Sbjct 3329 TTTGTTGAAT 3320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807364818861600