Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq4298 197 1e-45 >seq4298 Length=5336 Score = 197 bits (218), Expect = 1e-45 Identities = 573/880 (65%), Gaps = 6/880 (1%) Strand=Plus/Minus Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAG 21242 |||||||||| || ||| | ||||||||||||||| || || || ||||| || || Sbjct 2288 TTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAAGAGATCT 2229 Query 21243 ATTCCATAAAATCAAATGGATTTTCAG-ATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 |||||| ||| |||||||||| | ||| || |||| ||| || || || Sbjct 2228 GTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCC-AGCTCGACC 2170 Query 21302 AATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATC 21361 || || | ||| || |||| || || | || ||| || | ||| || |||||| Sbjct 2169 AACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGATTCCGATC 2110 Query 21362 AATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATT 21421 || ||||| | || | |||||||| || || || ||| |||| | Sbjct 2109 AAGGAGACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCTTTGGTGACA 2050 Query 21422 ATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCA 21481 || || | ||| | | ||| ||| | | ||| || | |||||| ||| Sbjct 2049 ATCTTCAAGATCTTCACCCGAGAAGGTCGATTGACGATGTGTCGGAAAAGCAAACAAGCA 1990 Query 21482 AAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGC 21541 ||||||||||| | |||||||| | || ||||||||| || || || || ||| Sbjct 1989 AAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGTCAAGCCAGGC 1930 Query 21542 ATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCC 21601 || | ||||| ||||| | |||||| || | |||||| | || || || || || || Sbjct 1929 ATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAAAAGATTCCT 1870 Query 21602 TCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTT-ATCCAATATCCA 21660 || |||||||| || ||||| | |||||| | | || | ||| | ||| |||| Sbjct 1869 TCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTA-ACTCTATCATCTTGAGTCCA 1811 Query 21661 TTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAG 21720 | | |||||||| || || | | | |||| | ||| | ||| || || ||||| Sbjct 1810 TCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGCATTGAAAAG 1751 Query 21721 ATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGA 21780 | || | | |||| | ||| |||| |||||||||||| Sbjct 1750 AAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGAATACATTTCAGA 1691 Query 21781 ATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAAC 21840 || |||||||| || || ||||||||||| |||||||||| ||||||| ||||| Sbjct 1690 GTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGGTATCTGAAC 1631 Query 21841 CTCG-GAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAA 21899 || |||| ||| || | ||| | || ||||| |||||||||||||| || ||||| | Sbjct 1630 ATCACGAATGAAA-CGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGCAGCAAAGA 1572 Query 21900 ATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATA 21959 |||| || | || || |||| | ||| || | | || ||||||| || Sbjct 1571 ATGCTAACACATGAGAGATGAAATGTTTTTCATTCTTATTCAACGAGTTCCAATGATCTA 1512 Query 21960 AATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATACA 22019 ||| |||||| |||||||| ||||||||| || || || || |||| Sbjct 1511 GATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCTTTCTTGTACA 1452 Query 22020 TAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059 | ||||||||| || ||| |||||||| | ||||| Sbjct 1451 TCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAA 1412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531775404386400