Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq4298 197 1e-45
>seq4298
Length=5336
Score = 197 bits (218), Expect = 1e-45
Identities = 573/880 (65%), Gaps = 6/880 (1%)
Strand=Plus/Minus
Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAG 21242
|||||||||| || ||| | ||||||||||||||| || || || ||||| || ||
Sbjct 2288 TTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAAGAGATCT 2229
Query 21243 ATTCCATAAAATCAAATGGATTTTCAG-ATTTAAATATTTTATTACAACCCAGTTCTGAT 21301
|||||| ||| |||||||||| | ||| || |||| ||| || || ||
Sbjct 2228 GTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCC-AGCTCGACC 2170
Query 21302 AATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATC 21361
|| || | ||| || |||| || || | || ||| || | ||| || ||||||
Sbjct 2169 AACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGATTCCGATC 2110
Query 21362 AATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATT 21421
|| ||||| | || | |||||||| || || || ||| |||| |
Sbjct 2109 AAGGAGACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCTTTGGTGACA 2050
Query 21422 ATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCA 21481
|| || | ||| | | ||| ||| | | ||| || | |||||| |||
Sbjct 2049 ATCTTCAAGATCTTCACCCGAGAAGGTCGATTGACGATGTGTCGGAAAAGCAAACAAGCA 1990
Query 21482 AAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGC 21541
||||||||||| | |||||||| | || ||||||||| || || || || |||
Sbjct 1989 AAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGTCAAGCCAGGC 1930
Query 21542 ATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCC 21601
|| | ||||| ||||| | |||||| || | |||||| | || || || || || ||
Sbjct 1929 ATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAAAAGATTCCT 1870
Query 21602 TCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTT-ATCCAATATCCA 21660
|| |||||||| || ||||| | |||||| | | || | ||| | ||| ||||
Sbjct 1869 TCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTA-ACTCTATCATCTTGAGTCCA 1811
Query 21661 TTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAG 21720
| | |||||||| || || | | | |||| | ||| | ||| || || |||||
Sbjct 1810 TCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGCATTGAAAAG 1751
Query 21721 ATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGA 21780
| || | | |||| | ||| |||| ||||||||||||
Sbjct 1750 AAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGAATACATTTCAGA 1691
Query 21781 ATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAAC 21840
|| |||||||| || || ||||||||||| |||||||||| ||||||| |||||
Sbjct 1690 GTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGGTATCTGAAC 1631
Query 21841 CTCG-GAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAA 21899
|| |||| ||| || | ||| | || ||||| |||||||||||||| || ||||| |
Sbjct 1630 ATCACGAATGAAA-CGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGCAGCAAAGA 1572
Query 21900 ATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATA 21959
|||| || | || || |||| | ||| || | | || ||||||| ||
Sbjct 1571 ATGCTAACACATGAGAGATGAAATGTTTTTCATTCTTATTCAACGAGTTCCAATGATCTA 1512
Query 21960 AATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATACA 22019
||| |||||| |||||||| ||||||||| || || || || ||||
Sbjct 1511 GATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCTTTCTTGTACA 1452
Query 22020 TAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059
| ||||||||| || ||| |||||||| | |||||
Sbjct 1451 TCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAA 1412
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531775404386400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |