Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq10223 502 3e-137
seq4298 322 6e-83
>seq10223
Length=44262
Score = 502 bits (556), Expect = 3e-137
Identities = 1200/1805 (66%), Gaps = 42/1805 (2%)
Strand=Plus/Plus
Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396
|| |||||||| || || || ||||||||| | ||||| || || || ||||| |
Sbjct 20290 ACCTGAAATTCGCCTGATAAAACTCTCCGATTATAAATGTTGGAAGTGTATGGTTCAAAT 20349
Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456
|| ||||| ||||| || |||||||| || ||||| |||||||| || || || | | |
Sbjct 20350 GATTCATTGTTTCCTAAGATTTGAGCTGTCGATGCGGTCGGCATCGGAGCAACTAGAAGA 20409
Query 62457 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC 62516
||||||| ||||||||| | || || ||||| | |||||||| ||| |||||
Sbjct 20410 CTATTTCGTAGACCGTATTTAGCAATATTTTCTTTCAATTTTTCCCAATCCCAGAGATCG 20469
Query 62517 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACA 62576
| ||| ||| |||||||| || ||| |||||| ||
Sbjct 20470 GTAGGTTTGCGATCCCACATATCGTATTGGAGAATACCTTTCGATGCGGGAGATCCTTCA 20529
Query 62577 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62636
|| || || || ||||| | | |||||| |||||| || ||||||||||| ||||||
Sbjct 20530 TAGGTTTCATAAGGTCCATGGATAGCAGCTAATTCACAGCTAGCCTCTAATGCTCCGTAA 20589
Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 62696
|| || |||||||| || | |||| | | || ||||| || ||||| |||||
Sbjct 20590 TAGATTGTTTCGAAAATTTGTATATTCAATTTTTTCGCTTCATCACTTTCAAAAGGATA- 20648
Query 62697 TTTAAG-AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 62755
| |||| | ||| ||||| || |||| ||||| || || || || || ||||| ||||
Sbjct 20649 TCTAAGCAAAATGAACGCATCAGCTAGACCTTGTACGCCGATTCCAATCGGTCTGTGTCG 20708
Query 62756 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 62815
| |||| || |||||| || | ||||||||||| | ||| || ||||| || |
Sbjct 20709 CATATTTGAACGACGAGCTTCCGGCAAGGGATAATAATTTACATCAATTATTTTGTTCAA 20768
Query 62816 ATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTAT 62875
|||| | || ||||||| | | |||| | |||||| | || | |
Sbjct 20769 ATTTTTCGTCATAACTTTGATGATGTTTTTCAACTCTCCAAAATCGTAGGATAGATTTTT 20828
Query 62876 T------ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT-TAG 62928
| ||||| | || ||||| || || ||||||||||| |||| || | | |
Sbjct 20829 TTGATTGACAAATTTTGGTAACGCAACCGAAGCTAGATTACAAACAGCTATTTCGTCTGG 20888
Query 62929 C-ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTT 62987
| || | ||||| | ||||| |||||||||||| || ||||| || || | ||||
Sbjct 20889 CGAT--GAATATTCAACAATCTCGGTGCAAAGATTAGAGCATTTGATGGTGCCAAGATTT 20946
Query 62988 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 63047
| ||||||| ||| | ||||| ||| || || | |||||||| || || |||||
Sbjct 20947 TTTTGATTAGATTTTCTATTACAATGATCTTTGTAGACCATGAATGGTGTTCCGGTTTCC 21006
Query 63048 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTC 63107
| ||||| || | || || ||| | | ||||| ||| | || || ||
Sbjct 21007 ACCTGAGCATCGACTATTGCGAACCAAAGTTCACGAGCTGGAATTT--GTTTGCGATATC 21064
Query 63108 CTTTCTCTTTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCA 63165
||||||||| ||| | ||| | |||||| || || |||||||||| | ||
Sbjct 21065 GATTCTCTTTCTCATATTTCTCATAGAGAGCTTCGAATTCTTCGCCCCAAACATCTTGCA 21124
Query 63166 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTC 63224
||||||||||||| | || |||||||||||||| | || || ||| | ||||||
Sbjct 21125 ATCCAGGACATTCTTTGGGGCACATCAACGACCAAACCCCATCGGT-TTCGCAACGTTTC 21183
Query 63225 ATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTT 63283
|| || | ||| || ||||| | || ||| || |||||||||| | ||| ||
Sbjct 21184 ATGAACAAATCCGGTATCCATAATGC-ATAGAAAAGATCTCTGGCACGTAATTCTTCTGA 21242
Query 63284 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63343
|| ||||| ||| | || | || | | |||||| | ||||||||||||||| ||
Sbjct 21243 GCCAGTATTTCGTTTCAAATTTAAAAAGTCGAAAATATCTGCATGCCACGGTTCCAAATA 21302
Query 63344 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63403
||| || | | | ||||| || || || || || ||||| | || | |||||| | ||
Sbjct 21303 TATTGCGAAAGCACCAGGACGCTTATTACCACCTTGATCGACATAACGAGCGGTATCGTT 21362
Query 63404 ATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCT 63463
||||||| |||||| |||| | ||| ||||| ||| ||||| || || ||
Sbjct 21363 GTAAACTCGCAACATCGGAACCAAACCATTTGAATGACCTTTGGTGCCAACTATGTACGA 21422
Query 63464 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63523
|||| | || |||||| | || ||||| || || || || || || || |
Sbjct 21423 TCCATTTGCTCGAATACAATGAACATTAAGACCGATGCCACCGGCTGACTTCGATATAAT 21482
Query 63524 TGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAG 63583
|| ||| |||| ||||| || || ||||| || || ||||||||| ||| | | ||
Sbjct 21483 AGCACATTGTTTCAACGTATCGTAAATACCTTCAATACTATCATCGGCCATCGTCAATAA 21542
Query 63584 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63643
|||||| ||||||||| || | | || || | |||||| || ||||| || |||||
Sbjct 21543 AAAACATGAAGACATTTGAGGATGGGTTGTACCAGAATTAAACAAAGTAGGTGAGGCGTG 21602
Query 63644 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63703
||||| || ||| | |||||| |||||||| || || || || ||||| ||
Sbjct 21603 TGTAAAAAGACCTTTAGACATTAGATTATACGTCTCGATGGCCGAATCAATATCTTCTTT 21662
Query 63704 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 63763
||| || || | ||||| | ||| ||||| ||||| |||||||| || | || ||
Sbjct 21663 ATGTATACCGATGGCGACTCTCATCAACATATGCTGTGGTCTTTCGACAACTTTCCCATT 21722
Query 63764 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63823
| | || | ||| | | || ||||| ||||||||||| ||||| ||| ||
Sbjct 21723 CACTCGTAATAGATAGCTTCGTAATAAGGTTTTGAAACCAAAATAATTGTAACTAAAATC 21782
Query 63824 TCGTTCGTAAATAATAACCGAGTTGAG---------TTTATCC-TTA-TATTTGTTAACT 63872
||| || ||||| || | || ||||| |||||| ||| |||| |||
Sbjct 21783 TCGATCATAAATTATCGCTGAATTGAGACGATCAGAGTTATCCATTACGATTTTATAAAC 21842
Query 63873 ATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAG 63932
|| ||| | | ||||||||| | ||| || |||| || |||||
Sbjct 21843 AT---CATCG--------GCGATAATCGGAATAGATTTGCCTGTTTTCTCATCGACATAA 21891
Query 63933 TTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGAT 63992
||| | | ||| | || || || || ||| || || || || |||||||| ||
Sbjct 21892 TTGTAGAGATCATGAATGACATCTGAGAAATTTTTCTTCGTCTCTTTTTGTAGATTAGAA 21951
Query 63993 ACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCT 64052
| | |||| || || |||| |||||||| | ||||||||| || || || ||
Sbjct 21952 ATAGAGATTCGAGCAGCGAGAACAGCATAATCGGTATGTTGTGTTGTCATCGTAGCAGCG 22011
Query 64053 ATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATA 64112
|| || || || || ||||||| || ||||| || ||| ||| || || | ||
Sbjct 22012 ATCTCCGCAGCTAGCTCATCCAATTGGACTGTTGTAACGCCAGAATAGATACCATTGATG 22071
Query 64113 ACCTT 64117
|||||
Sbjct 22072 ACCTT 22076
Score = 125 bits (138), Expect = 9e-24
Identities = 176/247 (71%), Gaps = 0/247 (0%)
Strand=Plus/Plus
Query 61986 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62045
|| |||| ||||||||||||| | || || ||| | ||||||||||| |||||||||
Sbjct 19863 TTATCCACAGTGAATTGAATGGCATTGGCCGCTGGTCTAGTACGTAGATAATACATTCCC 19922
Query 62046 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62105
||||| | ||| | ||| | || |||||||| || | ||||| | | |
Sbjct 19923 GTTTTCAAACCATTTCGCCAGCAATAGAAATGCATCGATGTCATTTTGGCCATAGTAGCC 19982
Query 62106 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62165
|| || ||||| ||||||| ||||||||||||||||||||| || || | ||| |||||
Sbjct 19983 TCAGCGATATGAATATTCAAAGATTGACTTTGATCGATGAACGCACCACGATCTACAGCC 20042
Query 62166 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 62225
|| | || | || || || || ||||||| || || || | | ||||| |||
Sbjct 20043 ATCTCACAAATTCTTTTCTGAGGGATCTCCCAAACGGTCTTGTAGAGTGCTTTAATTTCT 20102
Query 62226 TCTGGAA 62232
| |||||
Sbjct 20103 TTTGGAA 20109
>seq4298
Length=5336
Score = 322 bits (356), Expect = 6e-83
Identities = 615/901 (68%), Gaps = 25/901 (3%)
Strand=Plus/Minus
Query 33011 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATAT 33070
||||||| ||||| | |||||||||||||||||||||||||| || ||||| || || |
Sbjct 2288 TTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAAGAGATCT 2229
Query 33071 TTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAA 33130
|||||||||| || ||||| | ||| |||| ||| || ||| || |
Sbjct 2228 GTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCCAGCTCGACCA 2169
Query 33131 TCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 33190
||| | ||| ||| | |||| || || |||||| | ||| ||||| || |
Sbjct 2168 ACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGATTCCGATCA 2109
Query 33191 GTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 33250
|| || | || | || | ||||||||| ||||| ||||| | || | ||
Sbjct 2108 AGGAGACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCTTTGGTGACAA 2049
Query 33251 TAGATCTAACGGTTTCTTCACTCG-----GTGGATGCAATAAATGTTTAAACATCAAACA 33305
| | | | | |||||| || || ||| | | ||| || | ||||||
Sbjct 2048 TCT---TCAAGAT--CTTCACCCGAGAAGGTCGATTGACGATGTGTCGGAAAAGCAAACA 1994
Query 33306 TGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCC 33365
|| ||||| || || || || || || | || | ||| || || || | ||
Sbjct 1993 AGCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGTCAAGCC 1934
Query 33366 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGAT 33425
||||| || || || |||||||||||||| || | || || || ||||| || |||||
Sbjct 1933 AGGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAAAAGAT 1874
Query 33426 TCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTA---T 33482
|||||| || ||||| || |||| ||| | || || | | | || |||| | |
Sbjct 1873 TCCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCATCTTGAGT 1814
Query 33483 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33542
||| | |||||| | || ||||| | |||||||||| |||| |||||||| ||
Sbjct 1813 CCATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGCATTGAA 1754
Query 33543 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACATT 33600
||| | | | | |||| ||||||| | ||| |||| ||| | || || |||||||
Sbjct 1753 AAGAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGA--ATACATT 1696
Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660
|| || ||||| ||||| ||||| ||||||||||| || ||||||| |||||| | |||
Sbjct 1695 TCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGGTATC 1636
Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720
|| || || | || || || || | ||| ||||| |||||||| ||||| || |||
Sbjct 1635 TGAACATCACGAATGAAACGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGCAGCA 1576
Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA----TTCCA 33776
|| || || || ||||| || |||| |||||| | | ||| | | |||||
Sbjct 1575 AAGAATGCTAACACATGAGAGATGAAATGTTTTTCAT----TCTTATTCAACGAGTTCCA 1520
Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836
|| || | ||| | || ||| |||||||| ||||||||||| |||||||| || ||
Sbjct 1519 ATGATCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCTTT 1460
Query 33837 TTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATT 33896
|| ||||| | |||||| || | ||||| ||||| || | |||||||| ||| |||||
Sbjct 1459 CTTGTACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATCGATTCGGATT 1400
Query 33897 T 33897
|
Sbjct 1399 T 1399
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622800340197600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |