Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq6148 138 3e-27 seq4298 98.7 3e-15 >seq6148 Length=42148 Score = 138 bits (152), Expect = 3e-27 Identities = 212/299 (71%), Gaps = 10/299 (3%) Strand=Plus/Plus Query 111360 GAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAAT 111419 ||||| ||||| ||||| ||||| || || || | || |||||| | ||||||| Sbjct 25331 GAAGAGCTTCTCTGGTTCATTCGTGGCTCAACTGATTCGAAAGAACTTTCGAAAAAAAAT 25390 Query 111420 GTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGAC 111479 || ||||| ||||| | ||| || || | || ||||| ||||| |||| | ||| Sbjct 25391 GTCAAAATATGGGACGCAAACGGTTCGAGAGAATTTCTCGATTCTCTTGGCTTCAACGAT 25450 Query 111480 AACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGAC 111539 | |||||||| ||||||||||||||||| || |||||||||||||| || |||||||| Sbjct 25451 AGAGAAGAAGGAGATCTCGGACCAGTTTATGGCTTTCAATGGCGCCATTTCGGTGCAGAA 25510 Query 111540 TACAAAACCATGCACGACTCA-TATGATTCACAGGGAACTGATCAATTACAGAATGTCAT 111598 || || | ||| || | ||||| ||| || |||||| || || || Sbjct 25511 TATGTTGACAAGAACG-CTGATTATGAGGGACAAGGTGTCGATCAACTATCTAA----AT 25565 Query 111599 TGATCAA----ATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAAC 111653 ||||| | ||||||| || |||| | |||||| || ||| || |||| |||||| Sbjct 25566 TGATCGAAACTATTAAGACGAATCCAAATGATCGTCGAATGATTTTGTGTGCCTGGAAC 25624 >seq4298 Length=5336 Score = 98.7 bits (108), Expect = 3e-15 Identities = 314/471 (67%), Gaps = 17/471 (4%) Strand=Plus/Plus Query 22189 AACGAACAACATTTTATCAAATATATTCTAGCATTCTTTGCTACCGCAGACGGTATAGTT 22248 || ||| ||||||| ||| || | |||||||||||||| | || || |||||| Sbjct 1538 AATGAAAAACATTTCATCTCTCATGTGTTAGCATTCTTTGCTGCAAGTGATGGAATAGTT 1597 Query 22249 TTTGAGAATCTAG-TGACTAATTTTGCATC-TGAAATTCA-ATACCCAGAGGCCAGATGT 22305 ||||||||||| ||| ||| || ||| |||| ||||| |||||| ||||| Sbjct 1598 AATGAGAATCTAGCTGAGCG--TTTCATTCGTGATGTTCAGATACC-AGAGGCTCGATGT 1654 Query 22306 TTCTATGGTGTGCAAATGATGATTGAAAATGTTCACGCGGAAACATATTCTATGATGCTA 22365 || ||||| | || || || |||||| ||||| | |||| ||||| || | | Sbjct 1655 TTTTATGGATTTCAGATCGCCATCGAAAATATTCACTCTGAAATGTATTCGTTGCTCAT- 1713 Query 22366 CAGTCACTCG-TAGAAGATAAAGACGAACAACGAAACT-TATTCCGCGCGATTCGCACCA 22423 || | || || |||||||| | || | || | | ||| || |||| || Sbjct 1714 CAATACCTATATAAAAGATAAATATGAGAGA-GATTTTCTTTTCAATGCCATTCAAACAT 1772 Query 22424 TTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGT-TCA 22482 | | | | |||| || || | ||||| | | ||||| | |||| | | | Sbjct 1773 TGCCTTGTGTCGAGAAGAAAGCGAAATGGGCTATCAGATGGACTCAAGATGATAGAGTTA 1832 Query 22483 --TTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCAT 22540 || || ||||||||| |||| || |||| || ||||| || || || ||||| | | Sbjct 1833 GCTTTGCTGAACGTCTTGTTGCGTTCGCTGCCGTCGAAGGAATCTTTTTCTCTGGCTCGT 1892 Query 22541 TTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCA--AA 22598 || || ||||||||||| |||||||| | | | ||||| || | || ||||| || Sbjct 1893 TTGCGGCTATCTTTTGGCTTAAAAAACGAGGACTGATGCCTGGCTTGAC--TTTCAGTAA 1950 Query 22599 TGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCT 22649 ||| || || || ||||| || |||||| |||||||| ||| |||| Sbjct 1951 TGAATTGATCTCGCGTGATGAAGGACTTCATTGTGATTTTGCTTGTTTGCT 2001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303038652748520