Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq718 125 6e-24 seq135 122 7e-23 seq4298 100 2e-16 seq4581 84.2 2e-11 >seq718 Length=674 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| || ||||||||| | ||||| | ||||| ||| | | Sbjct 46 ATGCAGATTTTCGTGAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTTGAGCCTTCC 105 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | |||||| || ||| ||||||||||| || ||||| |||||| Sbjct 106 GATACGATTGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAA 165 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||||| || || || ||| | ||||||| ||| ||||||||||||| Sbjct 166 CAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAAT 225 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || ||||||||||| || | ||||| ||||| Sbjct 226 ATCCAAAAAGAATCCACTTTGCATTTGGTGTT 257 Score = 100 bits (110), Expect = 2e-16 Identities = 153/219 (70%), Gaps = 7/219 (3%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| || ||||||||| | || || | ||||| || | | Sbjct 274 ATGCAGATTTTCGTTAAAACTTTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 333 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | |||||| || || ||||||||||| || || || |||||| Sbjct 334 GATACAATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAA 393 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-------ACAGAAACGTCAGCGA 24163 || | |||||| || ||||| ||| | ||||||| | ||| ||||||| Sbjct 394 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGTCGAACTCNGAACTCTCAGCGA 453 Query 24164 TTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||||| || |||||||||||||| | || || ||||| Sbjct 454 TTATAATATCCAAAAAGAATCTACTTTGCACTTGGTGTT 492 >seq135 Length=1279 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || |||||||| | ||||| | ||||| || | | Sbjct 432 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAGACCATTACTTTGGAAGTGGAACCTTCC 491 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | |||||| || ||| || |||||||| || ||||| ||||| Sbjct 492 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 551 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | ||||||| | ||||| ||| | ||||||| ||| ||||||||||||| Sbjct 552 CAACGTCTGATTTTTGCTGGCAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAAT 611 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || |||||||||||||| | || || ||||| Sbjct 612 ATCCAAAAAGAATCTACTTTGCACTTGGTGTT 643 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || |||||||| ||||||||| | ||||| | ||||| || | | Sbjct 660 ATGCAGATTTTCGTTAAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCC 719 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | |||||| || ||| || |||||||| || || || |||||| Sbjct 720 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 779 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||||| | ||||| ||| | ||||||| |||| | |||||||| || Sbjct 780 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTACAAT 839 Query 24171 ATTCAAAAAGAATCTAC 24187 |||||||||||||| || Sbjct 840 ATTCAAAAAGAATCCAC 856 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || |||||||| ||||||||| | || || | ||||| || | | Sbjct 204 ATGCAGATTTTCGTGAAAACATTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 263 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | |||||| || || ||||||||||| || || || |||||| Sbjct 264 GATACTATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAA 323 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||||| | || || ||| | ||||||| ||| ||||||||||||| Sbjct 324 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAAT 383 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || ||||||||||| || | || || ||||| Sbjct 384 ATCCAAAAAGAATCCACTTTACACTTGGTGTT 415 Score = 89.7 bits (98), Expect = 4e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 24016 CTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAA 24075 |||||||| | || || | ||||| || | ||| || || || | |||||| | Sbjct 1 CTGGAAAAACTATCACTTTGGAAGTGGAACCTTCCGATACGATTGAAAATGTCAAAGCTA 60 Query 24076 AGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGC 24135 | ||| ||||||||||| || || || |||||||| | |||||| || || || | Sbjct 61 AAATTCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTTTGATTTTCGCTGGTAAAC 120 Query 24136 AACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATT 24195 || | ||||||| |||| | |||||||| || || || |||||||| || | |||| Sbjct 121 AATTGGAAGATGGTAGAACATTGAGCGATTACAATATCCAGAAAGAATCCACTTTGCATT 180 Query 24196 TAGTGTT 24202 | ||||| Sbjct 181 TGGTGTT 187 >seq4298 Length=5336 Score = 100 bits (110), Expect = 2e-16 Identities = 359/552 (65%), Gaps = 22/552 (4%) Strand=Plus/Minus Query 104589 TTTG-TATTCGCCTACTCGTTTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTAT 104647 |||| ||||| | || |||||||| ||||||||||| || ||||||| ||| || | | Sbjct 2285 TTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAAGAGATCTGTT 2226 Query 104648 TCATAAATTCGAAAGGATTCAAAGTCTTAAAATATTTTTCGTAGCCAAGCTCGATCAACA 104707 ||| || ||| ||||| || || || |||| | | ||||||| ||||| Sbjct 2225 CCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCCAGCTCGACCAACA 2166 Query 104708 GTCGATCCGCCACAAATTCGATGTACTCGCACATAGAATGTGC-ATTCATGCCCAGCATT 104766 ||||| || ||||||||||||| | ||| || |||| ||| || || | || Sbjct 2165 AACGATCAGCGCAGTATTCGATGTACTCACTCAT-CAAAGTGCTATTGATTCCGATCAAG 2107 Query 104767 GCGACGGGTAAAGCGTTAGTaaaaaaaTCTTTCTCGATGTCCACGGCTTCCTTAAACATG 104826 | ||| || || |||| || ||||| |||| ||| || || || |||| | | || Sbjct 2106 GAGACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCTTTGGTGACAATC 2047 Query 104827 TTCAGCACCTTGCTTTCAGAAAGCTTGTCCTCTTTGGCAATATATTTGTTGTAATAG-AG 104885 |||| | ||| |||| ||| ||| | || ||| | || || | Sbjct 2046 TTCAAGATCTTCACCCGAGAA----GGTC--GATTGAC----GATGTGTCGGAAAAGCAA 1997 Query 104886 GCAGGCAAAGTCTGTGTGCAATCCTTCATCTCTAGAAATAAGTTCGTTGCTGTAAGTCAA 104945 || ||||| || || | ||||||||| | || || | ||| || ||| ||||||| Sbjct 1996 ACAAGCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGTCAA 1937 Query 104946 GCCAGGTAGAGCCCCtttttttGTGTCTTTAATATAGTAGATGGCAGCAAAACTACCGGA 105005 |||||| | ||| ||| ||||| | |||| || ||||| || || Sbjct 1936 GCCAGGCATCAGTCCTCGTTT------TTTAAGCCAAAAGATAGCCGCAAACGAGCCAGA 1883 Query 105006 GAAAAAGACACCTTCGACGATGGCAAACGCGACCATGCGTTCGGCGAATGTAGCAGTTTG 105065 |||||||| ||||||||| || ||||| || | ||||| || || || | | | Sbjct 1882 GAAAAAGATTCCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATC 1823 Query 105066 ACTTTCAATCCATTTCTGAGCCCATGTTGCCTTCCGTTTGACGCTA-TCAATGTGCTCGA 105124 | || | ||||| | ||||||| | || ||| | ||| | | |||||| | | Sbjct 1822 ATCTTGAGTCCATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGT-TTGAA 1764 Query 105125 TGGCATTCAAAA 105136 ||||||| |||| Sbjct 1763 TGGCATTGAAAA 1752 >seq4581 Length=275 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 || |||||||| || ||||| ||||| || | || |||| | ||||| ||| | ||| Sbjct 254 GATAAAGAAGGTATTCCTCCAGATCAGCAACGTCTAATTTTTGCTGGCAAACAATTGGAA 195 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| |||| | ||||||||||||||||| |||||||| || | ||||| || || Sbjct 194 GATGGTAGAACATTGAGCGATTATAACATTCAGAAAGAATCAACTTTGCATTTGGTATT 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429837176523300