Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq718 102 8e-17 seq135 95.1 1e-14 >seq718 Length=674 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||| ||| ||||| | || || || ||||| || || |||||||| Sbjct 272 CCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTG 213 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | || || || ||| | || ||||| || || || ||||| Sbjct 212 AGAGTTCGACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 153 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTT-GAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| ||| |||| || | || | ||||||| | ||| | Sbjct 152 ATACCTTCTTTGTCT-TGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAAC 94 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| |||||| || || | |||||| |||||||||||||| Sbjct 93 TTCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46 >seq135 Length=1279 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || || |||| || || || |||||||| |||||||||||| Sbjct 886 CCACCACGGAGACGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTC 827 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | || || | || ||||| || | || ||||| || || || || || Sbjct 826 AATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 767 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTT-GAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || |||||||| || ||| ||| |||| || | || | ||||||| | || | Sbjct 766 ATACCTTCTTTATCT-TGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAAC 708 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | |||| |||||| || || | ||||| ||||||||||||||| Sbjct 707 TTCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCATG 659 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||||| ||| || || | || || || ||||| || || |||||||| Sbjct 659 GCCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCT 600 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || || || | || ||||| || | || | ||| ||||| || ||||| Sbjct 599 GAGAGTTCGACCATCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGG 540 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTT-GAGCTGCTCCACAGTATCGGTGGACTCGA 131185 || |||||||| || ||| ||| |||| || | || | ||||||| | || | Sbjct 539 AATACCTTCTTTATCT-TGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCA 481 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || || || | |||||| || ||||||||||| Sbjct 480 CTTCCAAAGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471901522982400