Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq16439 136 3e-27
seq135 129 4e-25
seq1894 127 1e-24
seq718 120 2e-22
seq16880 114 9e-21
seq17614 104 2e-17
>seq16439
Length=2923
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 1872 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 1813
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 1812 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1778
>seq135
Length=1279
Score = 129 bits (142), Expect = 4e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | | |||||||||||| || | |||| || ||||| ||||| |||||
Sbjct 432 TACCACCCCGGAGACGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGC 373
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| | || | || || |||||||| || ||||| || | ||||||||||| | |
Sbjct 372 TGAGAGTTCGACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTG 313
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | |||||||||||| ||||| || ||||| | | |||||| | |||||
Sbjct 312 GAATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAA 253
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||| || || || ||||| || ||||| ||||||||||| ||||||||
Sbjct 252 CTTCCAAAGTGATTGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204
Score = 127 bits (140), Expect = 1e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | | |||||| ||||| || | |||| || |||||||||||||||||
Sbjct 888 TACCACCACGGAGACGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGC 829
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
||| | | || || |||||||| || ||||| || | ||||||||||| | |
Sbjct 828 TCAATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTG 769
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | |||||||| || |||||| || ||||| | | ||||| | |||||
Sbjct 768 GAATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAA 709
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|||| || ||||| ||||| || ||||| ||||| ||||| |||||||||
Sbjct 708 CTTCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCATG 659
Score = 98.7 bits (108), Expect = 7e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | | |||||||||||| || | ||| || ||||| ||||| |||||
Sbjct 658 CCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTG 599
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | || | || || |||||||| || ||||| || || ||||| ||||| | ||
Sbjct 598 AGAGTTCGACCATCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGA 539
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| |||||||| || |||||| || ||||| | | ||||| | ||| |||
Sbjct 538 ATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACT 479
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || ||||| || || || ||||| ||||| || || ||||||||
Sbjct 478 TCCAAAGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432
Score = 86.0 bits (94), Expect = 4e-12
Identities = 140/202 (69%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | | |||||||||||||| | |||| || || || |||||||||||
Sbjct 204 TACCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGC 145
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
||| | | || || |||||||| || || || || | ||||||||||| | |
Sbjct 144 TCAATGTTCTACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTG 85
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | ||||||||||| |||||| || ||||| | | ||||| | ||| |
Sbjct 84 GAATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGTTCCA 25
Query 38269 CTTCTAATGTAATAGTTTTACC 38290
|||| || || |||||||| ||
Sbjct 24 CTTCCAAAGTGATAGTTTTTCC 3
>seq1894
Length=375
Score = 127 bits (140), Expect = 1e-24
Identities = 85/95 (89%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 244 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 303
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 304 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 338
>seq718
Length=674
Score = 120 bits (132), Expect = 2e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | | |||||||||||||| | |||| || ||||| ||||| |||||
Sbjct 274 TACCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGC 215
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| | || | || || |||||||| || || || || | ||||||||||| | |
Sbjct 214 TGAGAGTTCGACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAG 155
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | ||||||||||| |||||| || ||||| | | ||||| | ||||
Sbjct 154 GAATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAA 95
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||| || ||||| ||||| || ||||| ||||||||||| ||||||||
Sbjct 94 CTTCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46
Score = 104 bits (114), Expect = 2e-17
Identities = 166/236 (70%), Gaps = 7/236 (3%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA- 38147
||||||| | | |||||||||||| || | ||| || ||||| ||||| |||||
Sbjct 509 TACCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGC 450
Query 38148 -GACAAAACAC-GTTCG----TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGA 38201
|| | | ||||| || || |||||||| || || || || | |||||||||
Sbjct 449 TGAGAGTTCNGAGTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGA 390
Query 38202 TCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCA 38261
|| | || | |||||||||||| ||||| || ||||| | | ||||| |
Sbjct 389 TCTGGTGGAATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGAA 330
Query 38262 CTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||||||| || || || ||||| || ||||| ||||| ||||| ||||||||
Sbjct 329 GGTTCAACTTCCAAAGTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274
Score = 91.5 bits (100), Expect = 1e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222
|| || |||||||| || || || || | ||||||||||| | || | ||||||||
Sbjct 663 TCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTA 604
Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282
|| |||||| || ||||| | | |||||| | |||||||| || || |||
Sbjct 603 TCTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGCTCAACTTCCAAAGTGATA 544
Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||| || ||||| ||||||||||| || |||||
Sbjct 543 GTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 509
>seq16880
Length=1354
Score = 114 bits (126), Expect = 9e-21
Identities = 71/76 (93%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 272 CTCTCTCTTCAAAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGC 331
Query 20007 GGTAATATTTAGCCTT 20022
| ||||||||| |||
Sbjct 332 TGCAATATTTAGTCTT 347
>seq17614
Length=597
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 465 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 406
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 405 GCCGGTATTTAGCCTTA 389
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334870210292660
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |