Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq135 143 2e-29
seq718 141 8e-29
seq4581 95.1 1e-14
seq620 86.0 5e-12
>seq135
Length=1279
Score = 143 bits (158), Expect = 2e-29
Identities = 161/213 (76%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || || ||||| || ||| |||| || | ||||| || | ||
Sbjct 660 ATGCAGATTTTCGTTAAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCC 719
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| || || || |||| |||| |||| ||| || |||||||| |||||||| ||
Sbjct 720 GATACCATTGAAAATGTCA---AAGCTAAAATTCAA-GATAAAGAAGGTATTCCACCAGA 775
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||||| || | |||||||| ||||||||||| ||||||| | | || || |||||||
Sbjct 776 TCAACAACGTTTGATTTTTGCTGGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTA 835
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207
||||||||||||||||||||| |||| || ||
Sbjct 836 CAATATTCAAAAAGAATCCACTTTACACTTGGT 868
Score = 141 bits (156), Expect = 8e-29
Identities = 161/214 (75%), Gaps = 8/214 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || || ||||| || ||| | ||||| | ||||| || | ||
Sbjct 204 ATGCAGATTTTCGTGAAAACATTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 263
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| ||||| || |||| |||| |||| || ||||||||||| |||||||| ||
Sbjct 264 GATACTATTGAAAATGTCA---AAGCTAAAATACAG-GACAAAGAAGGTATTCCACCAGA 319
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||||| || | |||||||| || |||||||| ||||||| ||| ||| | |||||||
Sbjct 320 TCAACAACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTA 379
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTG 25208
||||| |||||||||||||| |||| || |||
Sbjct 380 TAATATCCAAAAAGAATCCACTTTACACTTGGTG 413
Score = 132 bits (146), Expect = 4e-26
Identities = 159/214 (74%), Gaps = 8/214 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || |||||||| || || |||| || | |||||||| | ||
Sbjct 432 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAGACCATTACTTTGGAAGTGGAACCTTCC 491
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| || || || |||| |||| |||| ||| || |||||||| ||||| || ||
Sbjct 492 GATACCATTGAAAATGTCA---AAGCTAAAATTCAA-GATAAAGAAGGTATTCCTCCAGA 547
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|| || || | |||||||| ||||||||||| ||||||| ||| ||| | |||||||
Sbjct 548 TCAGCAACGTCTGATTTTTGCTGGCAAACAATTGGAAGATGGTCGAACTCTCAGCGATTA 607
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTG 25208
||||| ||||||||||| || | || || |||
Sbjct 608 TAATATCCAAAAAGAATCTACTTTGCACTTGGTG 641
Score = 120 bits (132), Expect = 3e-22
Identities = 140/187 (75%), Gaps = 8/187 (4%)
Strand=Plus/Plus
Query 25026 GGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGA----GTCACTGAAGCA 25081
|| ||| | ||||| | |||||||| | || || || || || |||| ||||
Sbjct 3 GGAAAAACTATCACTTTGGAAGTGGAACCTTCCGATACGATTGAAAATGTCA---AAGCT 59
Query 25082 AAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAA 25141
|||| ||| ||||||||||| |||||||| || ||||| || | ||||| || || ||
Sbjct 60 AAAATTCAA-GACAAAGAAGGTATTCCACCAGATCAACAACGTTTGATTTTCGCTGGTAA 118
Query 25142 ACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACA 25201
|||||| ||||||| | | || || ||||||||||||| || ||||||||||| | ||
Sbjct 119 ACAATTGGAAGATGGTAGAACATTGAGCGATTACAATATCCAGAAAGAATCCACTTTGCA 178
Query 25202 TTTAGTG 25208
||| |||
Sbjct 179 TTTGGTG 185
Score = 84.2 bits (92), Expect = 2e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159
||| ||||| || || || || || | |||||||| || |||||||| ||||||| |
Sbjct 1040 AGGTATTCCGCCAGATCAGCAACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGCAG 1099
Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTG 25208
|| || ||||||||||||| || ||||||||||| | ||||| |||
Sbjct 1100 AACATTGAGCGATTACAATATCCAGAAAGAATCCACTTTGCATTTGGTG 1148
>seq718
Length=674
Score = 141 bits (156), Expect = 8e-29
Identities = 161/214 (75%), Gaps = 8/214 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || |||||||| || ||| |||| || | ||||| ||| | ||
Sbjct 46 ATGCAGATTTTCGTGAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTTGAGCCTTCC 105
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| || || || |||| |||| |||| ||| ||||||||||| ||||| || ||
Sbjct 106 GATACGATTGAAAATGTCA---AAGCTAAAATTCAA-GACAAAGAAGGTATTCCTCCAGA 161
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||||| || | ||||| || || |||||||| ||||||| ||| ||| | |||||||
Sbjct 162 TCAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTA 221
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTG 25208
||||| |||||||||||||| | ||||| |||
Sbjct 222 TAATATCCAAAAAGAATCCACTTTGCATTTGGTG 255
Score = 116 bits (128), Expect = 3e-21
Identities = 159/221 (72%), Gaps = 15/221 (7%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || |||||||| || ||| | ||||| | ||||| || | ||
Sbjct 274 ATGCAGATTTTCGTTAAAACTTTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 333
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| || || || |||| |||| |||| || ||||||||||| |||||||| ||
Sbjct 334 GATACAATTGAAAATGTCA---AAGCTAAAATACAG-GACAAAGAAGGTATTCCACCAGA 389
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTG-------G 25167
||||| || | ||||| || ||||||||||| ||||||| ||| ||| |
Sbjct 390 TCAACAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGTCGAACTCNGAACTCTCA 449
Query 25168 GCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTG 25208
||||||| ||||| ||||||||||| || | || || |||
Sbjct 450 GCGATTATAATATCCAAAAAGAATCTACTTTGCACTTGGTG 490
Score = 114 bits (126), Expect = 1e-20
Identities = 128/169 (76%), Gaps = 8/169 (5%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || || |||||||| || ||| | ||||| | ||||| ||| | ||
Sbjct 509 ATGCAAATTTTCGTGAAAACTTTGACTGGAAAAACTATCACTTTGGAAGTTGAGCCTTCC 568
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| ||||| || |||| |||| |||| ||| || |||||||| |||||||| ||
Sbjct 569 GATACTATTGAAAATGTCA---AAGCTAAAATTCAA-GATAAAGAAGGTATTCCACCAGA 624
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACT 25163
||||| || | ||||| || ||||||||||| ||||||| ||| |||
Sbjct 625 TCAACAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGTCGAACT 673
>seq4581
Length=275
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142
|||||| || |||||||| ||||| || || || || || | |||||||| ||||||
Sbjct 263 AAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAGCAACGTCTAATTTTTGCTGGCAAA 204
Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202
||||| ||||||| | | || || ||||||| || ||||| |||||||| || | |||
Sbjct 203 CAATTGGAAGATGGTAGAACATTGAGCGATTATAACATTCAGAAAGAATCAACTTTGCAT 144
Query 25203 TTAGT 25207
|| ||
Sbjct 143 TTGGT 139
>seq620
Length=8710
Score = 86.0 bits (94), Expect = 5e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 25137 GGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACG 25196
||||||||||| ||||||| | | || || ||||||||||||||||||||||||||||
Sbjct 8512 GGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTACAATATTCAAAAAGAATCCACT 8571
Query 25197 CTACATTTAGTG 25208
|||| ||||||
Sbjct 8572 TTACACTTAGTG 8583
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433228396850900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |