Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq135 143 2e-29 seq718 141 8e-29 seq4581 95.1 1e-14 seq620 86.0 5e-12 >seq135 Length=1279 Score = 143 bits (158), Expect = 2e-29 Identities = 161/213 (76%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || ||||| || ||| |||| || | ||||| || | || Sbjct 660 ATGCAGATTTTCGTTAAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCC 719 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || |||| |||| |||| ||| || |||||||| |||||||| || Sbjct 720 GATACCATTGAAAATGTCA---AAGCTAAAATTCAA-GATAAAGAAGGTATTCCACCAGA 775 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | |||||||| ||||||||||| ||||||| | | || || ||||||| Sbjct 776 TCAACAACGTTTGATTTTTGCTGGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTA 835 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||||||||||||||||||| |||| || || Sbjct 836 CAATATTCAAAAAGAATCCACTTTACACTTGGT 868 Score = 141 bits (156), Expect = 8e-29 Identities = 161/214 (75%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || ||||| || ||| | ||||| | ||||| || | || Sbjct 204 ATGCAGATTTTCGTGAAAACATTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 263 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||| || |||| |||| |||| || ||||||||||| |||||||| || Sbjct 264 GATACTATTGAAAATGTCA---AAGCTAAAATACAG-GACAAAGAAGGTATTCCACCAGA 319 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | |||||||| || |||||||| ||||||| ||| ||| | ||||||| Sbjct 320 TCAACAACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTA 379 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 ||||| |||||||||||||| |||| || ||| Sbjct 380 TAATATCCAAAAAGAATCCACTTTACACTTGGTG 413 Score = 132 bits (146), Expect = 4e-26 Identities = 159/214 (74%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || |||||||| || || |||| || | |||||||| | || Sbjct 432 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAGACCATTACTTTGGAAGTGGAACCTTCC 491 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || |||| |||| |||| ||| || |||||||| ||||| || || Sbjct 492 GATACCATTGAAAATGTCA---AAGCTAAAATTCAA-GATAAAGAAGGTATTCCTCCAGA 547 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || | |||||||| ||||||||||| ||||||| ||| ||| | ||||||| Sbjct 548 TCAGCAACGTCTGATTTTTGCTGGCAAACAATTGGAAGATGGTCGAACTCTCAGCGATTA 607 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 ||||| ||||||||||| || | || || ||| Sbjct 608 TAATATCCAAAAAGAATCTACTTTGCACTTGGTG 641 Score = 120 bits (132), Expect = 3e-22 Identities = 140/187 (75%), Gaps = 8/187 (4%) Strand=Plus/Plus Query 25026 GGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGA----GTCACTGAAGCA 25081 || ||| | ||||| | |||||||| | || || || || || |||| |||| Sbjct 3 GGAAAAACTATCACTTTGGAAGTGGAACCTTCCGATACGATTGAAAATGTCA---AAGCT 59 Query 25082 AAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAA 25141 |||| ||| ||||||||||| |||||||| || ||||| || | ||||| || || || Sbjct 60 AAAATTCAA-GACAAAGAAGGTATTCCACCAGATCAACAACGTTTGATTTTCGCTGGTAA 118 Query 25142 ACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 |||||| ||||||| | | || || ||||||||||||| || ||||||||||| | || Sbjct 119 ACAATTGGAAGATGGTAGAACATTGAGCGATTACAATATCCAGAAAGAATCCACTTTGCA 178 Query 25202 TTTAGTG 25208 ||| ||| Sbjct 179 TTTGGTG 185 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| ||||| || || || || || | |||||||| || |||||||| ||||||| | Sbjct 1040 AGGTATTCCGCCAGATCAGCAACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGCAG 1099 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 || || ||||||||||||| || ||||||||||| | ||||| ||| Sbjct 1100 AACATTGAGCGATTACAATATCCAGAAAGAATCCACTTTGCATTTGGTG 1148 >seq718 Length=674 Score = 141 bits (156), Expect = 8e-29 Identities = 161/214 (75%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || |||||||| || ||| |||| || | ||||| ||| | || Sbjct 46 ATGCAGATTTTCGTGAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTTGAGCCTTCC 105 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || |||| |||| |||| ||| ||||||||||| ||||| || || Sbjct 106 GATACGATTGAAAATGTCA---AAGCTAAAATTCAA-GACAAAGAAGGTATTCCTCCAGA 161 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | ||||| || || |||||||| ||||||| ||| ||| | ||||||| Sbjct 162 TCAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTA 221 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 ||||| |||||||||||||| | ||||| ||| Sbjct 222 TAATATCCAAAAAGAATCCACTTTGCATTTGGTG 255 Score = 116 bits (128), Expect = 3e-21 Identities = 159/221 (72%), Gaps = 15/221 (7%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || |||||||| || ||| | ||||| | ||||| || | || Sbjct 274 ATGCAGATTTTCGTTAAAACTTTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 333 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || |||| |||| |||| || ||||||||||| |||||||| || Sbjct 334 GATACAATTGAAAATGTCA---AAGCTAAAATACAG-GACAAAGAAGGTATTCCACCAGA 389 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTG-------G 25167 ||||| || | ||||| || ||||||||||| ||||||| ||| ||| | Sbjct 390 TCAACAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGTCGAACTCNGAACTCTCA 449 Query 25168 GCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 ||||||| ||||| ||||||||||| || | || || ||| Sbjct 450 GCGATTATAATATCCAAAAAGAATCTACTTTGCACTTGGTG 490 Score = 114 bits (126), Expect = 1e-20 Identities = 128/169 (76%), Gaps = 8/169 (5%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || |||||||| || ||| | ||||| | ||||| ||| | || Sbjct 509 ATGCAAATTTTCGTGAAAACTTTGACTGGAAAAACTATCACTTTGGAAGTTGAGCCTTCC 568 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||| || |||| |||| |||| ||| || |||||||| |||||||| || Sbjct 569 GATACTATTGAAAATGTCA---AAGCTAAAATTCAA-GATAAAGAAGGTATTCCACCAGA 624 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACT 25163 ||||| || | ||||| || ||||||||||| ||||||| ||| ||| Sbjct 625 TCAACAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGTCGAACT 673 >seq4581 Length=275 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142 |||||| || |||||||| ||||| || || || || || | |||||||| |||||| Sbjct 263 AAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAGCAACGTCTAATTTTTGCTGGCAAA 204 Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202 ||||| ||||||| | | || || ||||||| || ||||| |||||||| || | ||| Sbjct 203 CAATTGGAAGATGGTAGAACATTGAGCGATTATAACATTCAGAAAGAATCAACTTTGCAT 144 Query 25203 TTAGT 25207 || || Sbjct 143 TTGGT 139 >seq620 Length=8710 Score = 86.0 bits (94), Expect = 5e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 25137 GGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACG 25196 ||||||||||| ||||||| | | || || |||||||||||||||||||||||||||| Sbjct 8512 GGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTACAATATTCAAAAAGAATCCACT 8571 Query 25197 CTACATTTAGTG 25208 |||| |||||| Sbjct 8572 TTACACTTAGTG 8583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433228396850900