Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4298 343 2e-89 seq16430 104 3e-17 >seq4298 Length=5336 Score = 343 bits (380), Expect = 2e-89 Identities = 633/919 (69%), Gaps = 12/919 (1%) Strand=Plus/Minus Query 92794 ACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAA 92853 ||||||| |||||| ||||| |||| |||||| || ||||| || || || |||||| Sbjct 2295 ACACCACTTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAA 2236 Query 92854 GATATCGAATTCACTA--GTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAAC 92911 || ||| | || | | || |||||| || | || ||| | || || | || | Sbjct 2235 GAGATCTGTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCCAGC 2176 Query 92912 TCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATT 92971 ||| ||| || | |||||| |||| ||||||| | ||||||| | ||| ||| Sbjct 2175 TCGACCAACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGATT 2116 Query 92972 CCTAG-AAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTC 93030 || | ||| | ||||| | ||||||||||| || |||| ||| || | || |||| Sbjct 2115 CCGATCAAGGAG-ACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCTTT 2057 Query 93031 TTTCAAGAT-TTCTATTACTCTACT--ATTTGGTGGTTTTTGTACGACATAATTGTACAT 93087 | | || ||| | || || | ||| | || |||| | | | | Sbjct 2056 GGTGACAATCTTCAAGATCTTCACCCGAGAAGGTCGATTG---ACGATGTGTCGGAAAAG 2000 Query 93088 TAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGT 93147 || || ||||| || ||| | ||||| || || || ||||| ||||| ||||| || Sbjct 1999 CAAACAAGCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGT 1940 Query 93148 TAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaa 93207 || || || | |||||||||||| || |||||||| || | ||||| ||||| || Sbjct 1939 CAAGCCAGGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAA 1880 Query 93208 aaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT 93267 ||| || ||||| ||||| || || || |||| |||||| ||||| | | || | | Sbjct 1879 AAAGATTCCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCA-T 1821 Query 93268 GCTGA-TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAG 93326 ||| ||||| | | |||||| | ||||| |||| | |||||| | ||||| || | Sbjct 1820 CTTGAGTCCATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGG 1761 Query 93327 CGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAAT 93386 | || || || |||||| ||| | |||| ||| || |||| ||| | || |||| Sbjct 1760 CATTGAAAAGAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGAAT 1701 Query 93387 ACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCG 93446 |||||||||| || | ||| || || || || || ||||| || ||||||| ||| || | Sbjct 1700 ACATTTCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTG 1641 Query 93447 TGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506 ||||| || || || || | ||| | ||||| ||||| ||||| ||||| || Sbjct 1640 GTATCTGAACATCACGAATGAAACGCTCAGCTAGATTCTCATTAACTATTCCATCACTTG 1581 Query 93507 CTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCC 93566 | ||||| || || || | ||| || |||||||| |||| | || | | | || Sbjct 1580 CAGCAAAGAATGCTAACACATGAGAGATGAAATGTTTTTCATTCTTATTCAACGAGTTCC 1521 Query 93567 AATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTT 93626 ||| |||||| | ||||||||||||||| |||||||||||||| || |||| Sbjct 1520 AATGATCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCTT 1461 Query 93627 TTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGT 93686 | |||||||| ||||| || |||| |||||||||||||| | ||||| ||||| || | Sbjct 1460 TCTTGTACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATCGATTCGGAT 1401 Query 93687 TATCTTTTAGTAACGGCTC 93705 | ||| ||| || || || Sbjct 1400 TTTCTCGTAGCAATGGTTC 1382 >seq16430 Length=58505 Score = 104 bits (114), Expect = 3e-17 Identities = 81/96 (84%), Gaps = 3/96 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC---TCGGGAG 126321 ||||||| ||||||||||||||||||||||||| ||||| |||||| | | | | | | Sbjct 15452 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGTTCTGGTCCTCTTATGGAGGG 15511 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||||||||||| |||||||||| || || Sbjct 15512 CGTGGGTTCGAACCCCACTTCTGACAAATTTTTTTT 15547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556729520066400