Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq4298 343 2e-89
seq16430 104 3e-17
>seq4298
Length=5336
Score = 343 bits (380), Expect = 2e-89
Identities = 633/919 (69%), Gaps = 12/919 (1%)
Strand=Plus/Minus
Query 92794 ACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAA 92853
||||||| |||||| ||||| |||| |||||| || ||||| || || || ||||||
Sbjct 2295 ACACCACTTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAA 2236
Query 92854 GATATCGAATTCACTA--GTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAAC 92911
|| ||| | || | | || |||||| || | || ||| | || || | || |
Sbjct 2235 GAGATCTGTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCCAGC 2176
Query 92912 TCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATT 92971
||| ||| || | |||||| |||| ||||||| | ||||||| | ||| |||
Sbjct 2175 TCGACCAACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGATT 2116
Query 92972 CCTAG-AAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTC 93030
|| | ||| | ||||| | ||||||||||| || |||| ||| || | || ||||
Sbjct 2115 CCGATCAAGGAG-ACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCTTT 2057
Query 93031 TTTCAAGAT-TTCTATTACTCTACT--ATTTGGTGGTTTTTGTACGACATAATTGTACAT 93087
| | || ||| | || || | ||| | || |||| | | | |
Sbjct 2056 GGTGACAATCTTCAAGATCTTCACCCGAGAAGGTCGATTG---ACGATGTGTCGGAAAAG 2000
Query 93088 TAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGT 93147
|| || ||||| || ||| | ||||| || || || ||||| ||||| ||||| ||
Sbjct 1999 CAAACAAGCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGT 1940
Query 93148 TAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaa 93207
|| || || | |||||||||||| || |||||||| || | ||||| ||||| ||
Sbjct 1939 CAAGCCAGGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAA 1880
Query 93208 aaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT 93267
||| || ||||| ||||| || || || |||| |||||| ||||| | | || | |
Sbjct 1879 AAAGATTCCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCA-T 1821
Query 93268 GCTGA-TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAG 93326
||| ||||| | | |||||| | ||||| |||| | |||||| | ||||| || |
Sbjct 1820 CTTGAGTCCATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGG 1761
Query 93327 CGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAAT 93386
| || || || |||||| ||| | |||| ||| || |||| ||| | || ||||
Sbjct 1760 CATTGAAAAGAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGAAT 1701
Query 93387 ACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCG 93446
|||||||||| || | ||| || || || || || ||||| || ||||||| ||| || |
Sbjct 1700 ACATTTCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTG 1641
Query 93447 TGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506
||||| || || || || | ||| | ||||| ||||| ||||| ||||| ||
Sbjct 1640 GTATCTGAACATCACGAATGAAACGCTCAGCTAGATTCTCATTAACTATTCCATCACTTG 1581
Query 93507 CTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCC 93566
| ||||| || || || | ||| || |||||||| |||| | || | | | ||
Sbjct 1580 CAGCAAAGAATGCTAACACATGAGAGATGAAATGTTTTTCATTCTTATTCAACGAGTTCC 1521
Query 93567 AATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTT 93626
||| |||||| | ||||||||||||||| |||||||||||||| || ||||
Sbjct 1520 AATGATCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCTT 1461
Query 93627 TTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGT 93686
| |||||||| ||||| || |||| |||||||||||||| | ||||| ||||| || |
Sbjct 1460 TCTTGTACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATCGATTCGGAT 1401
Query 93687 TATCTTTTAGTAACGGCTC 93705
| ||| ||| || || ||
Sbjct 1400 TTTCTCGTAGCAATGGTTC 1382
>seq16430
Length=58505
Score = 104 bits (114), Expect = 3e-17
Identities = 81/96 (84%), Gaps = 3/96 (3%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC---TCGGGAG 126321
||||||| ||||||||||||||||||||||||| ||||| |||||| | | | | | |
Sbjct 15452 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGTTCTGGTCCTCTTATGGAGGG 15511
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357
|||||||||||||||||| |||||||||| || ||
Sbjct 15512 CGTGGGTTCGAACCCCACTTCTGACAAATTTTTTTT 15547
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556729520066400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |