Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq135 161 8e-35 seq718 134 1e-26 seq4581 102 7e-17 seq620 93.3 4e-14 >seq135 Length=1279 Score = 161 bits (178), Expect = 8e-35 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||||||||| |||| || || |||||||| ||||| |||||| | Sbjct 432 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAGACCATTACTTTGGAAGTGGAACCTTCC 491 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || ||| |||||| || |||||||| |||| ||||| Sbjct 492 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 551 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | || |||| ||| |||||||||||||||||| | |||| | |||||||||| Sbjct 552 CAACGTCTGATTTTTGCTGGCAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAAT 611 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || |||||||||||||| | || || ||||||||||| || ||||||| Sbjct 612 ATCCAAAAAGAATCTACTTTGCACTTGGTGTTGCGTCTCCGTGGTGGCA 660 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| ||||| || ||||| |||| || ||||||||||| ||||| ||||| | Sbjct 660 ATGCAGATTTTCGTTAAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCC 719 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || ||| |||||| || |||||||| |||| |||||| Sbjct 720 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 779 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | |||| ||| |||||||||||||||||| || ||| || |||||| ||| Sbjct 780 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTACAAT 839 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||||||||| || |||| || || |||||||| || ||||| Sbjct 840 ATTCAAAAAGAATCCACTTTACACTTGGTATTGCGTCTCCGTGGTGG 886 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| ||||| || ||||| |||| || ||||| || || ||||| ||||| | Sbjct 204 ATGCAGATTTTCGTGAAAACATTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 263 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | || ||| ||||| ||||||||||| |||| |||||| Sbjct 264 GATACTATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAA 323 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | |||| ||| || ||||||||||||||| | |||| | |||||||||| Sbjct 324 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAAT 383 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||||||||| || |||| || ||||||||||| || ||||| Sbjct 384 ATCCAAAAAGAATCCACTTTACACTTGGTGTTGCGTCTCCGGGGTGG 430 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 111214 GGCAAAACCATTACCGTGGAAACGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAA 111273 || ||||| || || ||||| |||||| |||| | ||| | || ||| ||| Sbjct 3 GGAAAAACTATCACTTTGGAAGTGGAACCTTCCGATACGATTGAAAATGTCAAAGCTAAA 62 Query 111274 ATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAA 111333 ||| ||||||||||| |||| ||||||||| | | |||| || || |||||| Sbjct 63 ATTCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTTTGATTTTCGCTGGTAAACAA 122 Query 111334 TTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTA 111393 ||||||||| || ||| || |||||| ||||| || |||||||| || | ||||| Sbjct 123 TTGGAAGATGGTAGAACATTGAGCGATTACAATATCCAGAAAGAATCCACTTTGCATTTG 182 Query 111394 GTGTTGCGTCTGCGCGGTGG 111413 |||||||| || || ||||| Sbjct 183 GTGTTGCGACTCCGTGGTGG 202 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 111301 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 111360 ||||| ||| | | |||| ||| || ||||||||||||||| | ||| || |||| Sbjct 1053 GATCAGCAACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGCAGAACATTGAGCGAT 1112 Query 111361 TATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || |||||||| || | ||||| |||||||| || || ||||| Sbjct 1113 TACAATATCCAGAAAGAATCCACTTTGCATTTGGTGTTGCGACTCCGTGGTGG 1165 >seq718 Length=674 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| ||||| || ||||| |||| || ||||||||||| ||||| || || | Sbjct 46 ATGCAGATTTTCGTGAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTTGAGCCTTCC 105 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || ||| |||||| ||||||||||| |||| |||||| Sbjct 106 GATACGATTGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAA 165 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | |||| || || ||||||||||||||| | |||| | |||||||||| Sbjct 166 CAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAAT 225 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||||||||| || | ||||| |||||||| || || ||||| Sbjct 226 ATCCAAAAAGAATCCACTTTGCATTTGGTGTTGCGACTCCGTGGTGG 272 Score = 127 bits (140), Expect = 2e-24 Identities = 169/234 (72%), Gaps = 7/234 (3%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| ||||| || ||||| |||| || ||||| || || ||||| ||||| | Sbjct 274 ATGCAGATTTTCGTTAAAACTTTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 333 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || ||| ||||| ||||||||||| |||| |||||| Sbjct 334 GATACAATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAA 393 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAA-----AACTATGGCCGA 111359 ||| | | |||| || |||||||||||||||||| || || |||| | ||| Sbjct 394 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGTCGAACTCNGAACTCTCAGCGA 453 Query 111360 TTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||||||||| |||||||||||||| | || || ||||||||||| || ||||| Sbjct 454 TTATAATATCCAAAAAGAATCTACTTTGCACTTGGTGTTGCGTCTCCGTGGTGG 507 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| || ||||| |||| || ||||| || || ||||| || || | Sbjct 509 ATGCAAATTTTCGTGAAAACTTTGACTGGAAAAACTATCACTTTGGAAGTTGAGCCTTCC 568 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | || ||| |||||| || |||||||| |||| |||||| Sbjct 569 GATACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 628 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT 111342 ||| | | |||| || |||||||||||||||||| Sbjct 629 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGAT 664 >seq4581 Length=275 Score = 102 bits (112), Expect = 7e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 || |||||||| |||| ||||| ||| | || |||| ||| ||||||||||||||| Sbjct 254 GATAAAGAAGGTATTCCTCCAGATCAGCAACGTCTAATTTTTGCTGGCAAACAATTGGAA 195 Query 111340 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111399 ||| || ||| || ||||||||| || || |||||||| || | ||||| || ||| Sbjct 194 GATGGTAGAACATTGAGCGATTATAACATTCAGAAAGAATCAACTTTGCATTTGGTATTG 135 Query 111400 CGTCTGCGCGGTGG 111413 ||||| || ||||| Sbjct 134 CGTCTTCGTGGTGG 121 >seq620 Length=8710 Score = 93.3 bits (102), Expect = 4e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 111325 GGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACA 111384 |||||||||||||||||| || ||| || |||||| ||||| ||||||||||| || Sbjct 8512 GGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTACAATATTCAAAAAGAATCCACT 8571 Query 111385 CTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 |||| |||||||||||||| || ||||| Sbjct 8572 TTACACTTAGTGTTGCGTCTCCGGGGTGG 8600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422942761612000