Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq10223 163 2e-35 seq135 163 2e-35 seq718 150 2e-31 seq620 93.3 4e-14 >seq10223 Length=44262 Score = 163 bits (180), Expect = 2e-35 Identities = 716/1112 (64%), Gaps = 51/1112 (5%) Strand=Plus/Plus Query 129133 ACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAAC 129192 || ||||| || || | ||||| | |||| ||||||||| ||| | || ||||| Sbjct 20290 ACCTGAAATTCGCCTGATAAAACTCTCCGATTATAAATGTTGGAAGTGTATGGTTCAAAT 20349 Query 129193 GATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGC 129252 ||||||||||| ||||| |||||||| || | ||||| ||||| ||| || ||| Sbjct 20350 GATTCATTGTTTCCTAAGATTTGAGCTGTCGATGCGGTCGGCATCGGAGCAACTAGAAGA 20409 Query 129253 GAGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCC--ACATCG 129310 ||||| | ||||| | ||| | || ||| |||| | ||| |||| | |||| Sbjct 20410 CTATTTCGTAGACCGTATTTAGCAATATTTTCTTTCAATTTTTCCCAATCCCAGAGATCG 20469 Query 129311 ATGTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGA----CTG 129366 || ||| || ||| ||||| |||||||| | ||||| |||||| || Sbjct 20470 --GTAGGTTTGCGATCCCACATATCGTATTGGAGAATACCTTTCGATGCGGGAGATCCTT 20527 Query 129367 GAAAAGTAGGA-ATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGC 129425 | | || | | || || | | ||| || ||||| || || || || ||||| Sbjct 20528 CATAGGTTTCATAAGGTCCATG--GATAGC---AGCTAATTCACAGCTAGCCTCTAATGC 20582 Query 129426 GCCAAAATAAATTGTTTCGGCAATTTTGGTGTTCAACACTTTGGCCTGGTCGCTTTCGTA 129485 || |||| ||||||||| ||||| | ||||| ||| || | || ||||| | Sbjct 20583 TCCGTAATAGATTGTTTCGAAAATTTGTATATTCAATTTTTTCGCTTCATCACTTTCAAA 20642 Query 129486 CGG---CATACGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGG 129542 || || |||| ||| || | || || | |||||| | || | || || || Sbjct 20643 AGGATATCTAAGCAAAATG---AACGCATCAGCTAGACCTTGTACGCCGATTCCAATCGG 20699 Query 129543 TCGATGTTTTCTATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAAT 129602 || ||| |||| || | || | ||||||||| || || | || || || Sbjct 20700 TCTGTGTCGCATATTTGAACGACGAGCTTCCGGCAAGGGATAATAATTTACATCAATTAT 20759 Query 129603 TTTGTTTAAATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTA--C 129660 |||||| ||||| || || || ||| | | || ||| ||| | |||||| ||| Sbjct 20760 TTTGTTCAAATTTTTCGTCATAACTTTGATGATGTTTTTCAACTCTCCAAAATCGTAGGA 20819 Query 129661 TCGCCTACATCGATGTCGACAAATTGATTG---ACACAAATCGAGGCCAAATTGCAGACG 129717 | | | | || | |||||||| ||| || | || ||| || | ||| || || Sbjct 20820 TAGATTTTTTTGA--TTGACAAATT--TTGGTAACGC-AACCGAAGCTAGATTACAAACA 20874 Query 129718 GCACTTTCGTTTTTGTCACTG--TACTCGACAATTTCGGCGCACAAATTACTATTTTTAA 129775 || ||||| | || | || || || ||||| |||| ||| | |||| ||| | Sbjct 20875 GCTATTTCG--TCTGGCGATGAATATTCAACAATCTCGGTGCAAAGATTAGAGCATTTGA 20932 Query 129776 TGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACG 129835 ||||||| | || ||||||||| ||| | || ||| ||||||||| | |||| | | Sbjct 20933 TGGTGCCAAGATTTTTTTGATTAGATTTTCTATTACAATGATCTTTGTAGACCATGAATG 20992 Query 129836 GCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTCCTGAAC--AAG-TCTCGAGCCTTGA 129892 | || || ||||| || || | ||||| || | |||| ||| || ||||| | Sbjct 20993 GTGTTCCGGTTTCCACCTGAGCATCGACTATTG---CGAACCAAAGTTCACGAGCTGGAA 21049 Query 129893 TCTGTCTTACAAATTTGCCAC-ATTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAG 129951 | ||| || | | | | | |||||| ||| | |||| || ||| |||||| | Sbjct 21050 TTTGT-TTGCGATATCGATTCTCTTTCTCATATTTCTCATAGAGAGCTTCGAATTCTTCG 21108 Query 129952 CCGTGTACGGTGTCGAGCAA---CGGCGATTCACGCGGACACATCAAACTCCACATTCCA 130008 || || || |||| || |||| || |||||||| ||| | ||| Sbjct 21109 CCCCAAAC---ATCTTGCAATCCAGGACATTCTTTGGGGCACATCAACGACCAAACCCCA 21165 Query 130009 TCCGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGC 130068 || | |||| |||||||| |||||||| |||| ||| | || || || | ||||| Sbjct 21166 TCGGTTTCGCAACGTTTCATGAACAAATCCGGTATCCATAATGCATAGAAAAGATCTCTG 21225 Query 130069 GCTTTTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCG 130128 || | || || | || | || ||||||| | | || ||| |||| || || Sbjct 21226 GCACGTAATTCTTCTGAGCCAGTATTTCGTTTCAAATTTAAAAAGTCGAAAATATCTGCA 21285 Query 130129 TGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCG---TTTGCCCCCTTGGTCAACG 130185 ||||||||||| | ||| ||||| | || || || || || ||||| || || Sbjct 21286 TGCCACGGTTCCAAATATATTGCGAAAGCACCAGGACGCTTATTACCACCTTGATCGACA 21345 Query 130186 TGGCGCACGGCATTGTTGTAGACTCGCAACAT 130217 | || ||| || |||||| ||||||||||| Sbjct 21346 TAACGAGCGGTATCGTTGTAAACTCGCAACAT 21377 >seq135 Length=1279 Score = 163 bits (180), Expect = 2e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| |||||||| || || || ||||| | ||| | ||||| ||| | || Sbjct 660 ATGCAGATTTTCGTTAAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCC 719 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || ||||| ||||||||||| || || ||||||||||| |||||| Sbjct 720 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 779 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| |||||||| || || ||| | || | ||||||||| Sbjct 780 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTACAAT 839 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||||||||| |||| || || ||||| | || || ||| Sbjct 840 ATTCAAAAAGAATCCACTTTACACTTGGTATTGCGTCTCCGTGGTGGT 887 Score = 154 bits (170), Expect = 1e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| |||||||| || || || || | ||| | ||||||||| | || Sbjct 432 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAGACCATTACTTTGGAAGTGGAACCTTCC 491 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || ||||| ||||||||||| || || |||||||| || ||||| Sbjct 492 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 551 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| |||||||| || || ||| || || || |||||| || Sbjct 552 CAACGTCTGATTTTTGCTGGCAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAAT 611 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || ||||||||||| || | || || || ||||| Sbjct 612 ATCCAAAAAGAATCTACTTTGCACTTGGTGTTGCG 646 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || ||||| || || || ||||| ||||| | ||||| ||| | || Sbjct 204 ATGCAGATTTTCGTGAAAACATTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 263 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || ||||| ||||| || ||||| || ||||||||||| |||||| Sbjct 264 GATACTATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAA 323 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| || || ||| || || || |||||| || Sbjct 324 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAAT 383 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || |||||||||||||| |||| || || ||||| | || || ||| Sbjct 384 ATCCAAAAAGAATCCACTTTACACTTGGTGTTGCGTCTCCGGGGTGGT 431 Score = 132 bits (146), Expect = 4e-26 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22246 GGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAA 22305 || ||||| ||||| | ||||||||| | ||||||| | || || ||||| ||| Sbjct 3 GGAAAAACTATCACTTTGGAAGTGGAACCTTCCGATACGATTGAAAATGTCAAAGCTAAA 62 Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365 ||||||||||| || ||||||||||| |||||||||||| | || || || || ||||| Sbjct 63 ATTCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTTTGATTTTCGCTGGTAAACAA 122 Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTA 22425 || || ||| | || | ||||||||| || || ||||||||||| | ||||| Sbjct 123 TTGGAAGATGGTAGAACATTGAGCGATTACAATATCCAGAAAGAATCCACTTTGCATTTG 182 Query 22426 GTTTTGCGATTGCGCGGAGGT 22446 || |||||| | || || ||| Sbjct 183 GTGTTGCGACTCCGTGGTGGT 203 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 |||||||| || ||||| |||||| | || ||||| || ||||| || || ||| | | Sbjct 1041 GGTATTCCGCCAGATCAGCAACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGCAGA 1100 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGC 22440 || | ||||||||| || || ||||||||||| | ||||| || |||||| | || Sbjct 1101 ACATTGAGCGATTACAATATCCAGAAAGAATCCACTTTGCATTTGGTGTTGCGACTCCGT 1160 Query 22441 GGAGGT 22446 || ||| Sbjct 1161 GGTGGT 1166 >seq718 Length=674 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || |||||||| || || ||||| | ||| | ||||| || | || Sbjct 46 ATGCAGATTTTCGTGAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTTGAGCCTTCC 105 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || ||||| |||||||||||||| || |||||||| || |||||| Sbjct 106 GATACGATTGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAA 165 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || || || ||||| || || ||| || || || |||||| || Sbjct 166 CAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAAT 225 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || |||||||||||||| | ||||| || |||||| | || || ||| Sbjct 226 ATCCAAAAAGAATCCACTTTGCATTTGGTGTTGCGACTCCGTGGTGGT 273 Score = 138 bits (152), Expect = 9e-28 Identities = 171/235 (73%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| ||||||||||| || || ||||| ||||| | ||||| ||| | || Sbjct 274 ATGCAGATTTTCGTTAAAACTTTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 333 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || ||||| ||||| || ||||| || ||||||||||| |||||| Sbjct 334 GATACAATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAA 393 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGAT-------CACCGCACCGTCTCCGA 22391 |||||| | || || || |||||||| || || ||| | | | || || ||| Sbjct 394 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGTCGAACTCNGAACTCTCAGCGA 453 Query 22392 TTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||| || || ||||||||||| || | || || || ||||| | || || ||| Sbjct 454 TTATAATATCCAAAAAGAATCTACTTTGCACTTGGTGTTGCGTCTCCGTGGTGGT 508 Score = 123 bits (136), Expect = 2e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || |||||||| || || ||||| ||||| | ||||| || | || Sbjct 509 ATGCAAATTTTCGTGAAAACTTTGACTGGAAAAACTATCACTTTGGAAGTTGAGCCTTCC 568 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || ||||| ||||||||||| || || ||||||||||| |||||| Sbjct 569 GATACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 628 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGAT 22374 |||||| | || || || |||||||| || || ||| Sbjct 629 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGAT 664 >seq620 Length=8710 Score = 93.3 bits (102), Expect = 4e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||||||||||||||||||||| || || ||||| ||||| | ||||||||| | Sbjct 8283 AAGATGCAAATTTTTGTTAAAACTTTGACTGGAAAAACTATCACTTTGGAAGTGGAACCT 8342 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTA 22324 ||||||| | || | ||||| || ||||||||||| || |||| Sbjct 8343 TCCGATACAATTGAAAACGTCAAAGCTAAGATTCAAGACAAAGAAGGTA 8391 Score = 93.3 bits (102), Expect = 4e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| |||||||| || || ||||| ||||| | ||||||||| | || Sbjct 8602 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAAACTATCACTTTGGAAGTGGAACCTTCC 8661 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTC 22327 |||||| | || || ||||| ||||||||||| || || ||||||| Sbjct 8662 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTC 8710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419631522895900