Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq135 161 2e-34
seq718 152 9e-32
seq4581 104 4e-17
seq8921 87.8 3e-12
>seq135
Length=1279
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || |||||||||||||||| ||||| |||||||| || || ||||||
Sbjct 886 CCACCACGGAGACGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTC 827
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| ||| || |||||||| || || || || || || || | | |||||| || ||||||
Sbjct 826 AATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 767
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||| || |||||||| || || ||||| || ||||| || | | ||| |||
Sbjct 766 ATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAACT 707
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || ||||||||||| || | || || ||||| ||||||||
Sbjct 706 TCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCAT 660
Score = 158 bits (174), Expect = 2e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || ||||| |||||||||| ||||| ||||||||||| ||||||||| |
Sbjct 430 CCACCCCGGAGACGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGCTG 371
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| || || || || || || || | | |||||| || ||||||
Sbjct 370 AGAGTTCGACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 311
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||| ||||| || || || || ||||| || || || || | | ||| |||
Sbjct 310 ATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAACT 251
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| ||||| |||||||| || | || || ||||| ||||||||
Sbjct 250 TCCAAAGTGATTGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204
Score = 149 bits (164), Expect = 1e-30
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || ||||| |||||||| | || || ||||||||||| ||||||||| |
Sbjct 658 CCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTG 599
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| || || || || || || || || | ||| || || || |||
Sbjct 598 AGAGTTCGACCATCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGA 539
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||| || |||||||| || || ||||| || ||||| || | | ||| |||
Sbjct 538 ATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACT 479
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || ||||| ||||| || | || ||||| || ||||||||
Sbjct 478 TCCAAAGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432
Score = 136 bits (150), Expect = 7e-27
Identities = 150/200 (75%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || ||||| ||||| || | ||||| ||||| ||||| || ||||||
Sbjct 202 CCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTC 143
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| ||| || |||||||| || || || || ||||| || | | |||||| || ||||||
Sbjct 142 AATGTTCTACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGA 83
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||| ||||||||||| || || ||||| || || || || | | ||| |||
Sbjct 82 ATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGTTCCACT 23
Query 68415 TCCAAGGTGATGGTTTTTCC 68434
||||| ||||| ||||||||
Sbjct 22 TCCAAAGTGATAGTTTTTCC 3
>seq718
Length=674
Score = 152 bits (168), Expect = 9e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || ||||| ||||| || | ||||| ||||||||||| ||||||||| |
Sbjct 272 CCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTG 213
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| || || || || ||||| || | | |||||| || || |||
Sbjct 212 AGAGTTCGACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 153
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||| ||||||||||| || || ||||| || || || || | | || |||
Sbjct 152 ATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAACT 93
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || ||||||||||| || | || || ||||| ||||||||
Sbjct 92 TCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46
Score = 145 bits (160), Expect = 1e-29
Identities = 173/234 (74%), Gaps = 7/234 (3%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCG--G 68292
|| || || || ||||| |||||||| | || || ||||||||||| ||||||||| |
Sbjct 507 CCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTG 448
Query 68293 AGAGT-----GTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347
||||| || | |||||||| || || || || ||||| || | | |||||| ||
Sbjct 447 AGAGTTCNGAGTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATC 388
Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA 68407
|||||||| ||||| ||||| || || || || ||||| || || || || | |
Sbjct 387 TGGTGGAATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGAAGG 328
Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||| |||||||| ||||| |||||||| || | || || ||||| ||||||||
Sbjct 327 TTCAACTTCCAAAGTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274
>seq4581
Length=275
Score = 104 bits (114), Expect = 4e-17
Identities = 114/152 (75%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| ||||||||||| || | || || ||||| || ||||||||||||
Sbjct 121 CCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTCTGAATGTTATAATCGCTC 180
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| ||| || |||||||| || || || || || || || || | ||| || || || |||
Sbjct 181 AATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATTAGACGTTGCTGATCTGGAGGA 240
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC 68386
|| ||||| || ||||| || || || |||||
Sbjct 241 ATACCTTCTTTATCTTGGATTTTAGCTTTGAC 272
>seq8921
Length=5376
Score = 87.8 bits (96), Expect = 3e-12
Identities = 253/387 (65%), Gaps = 2/387 (1%)
Strand=Plus/Plus
Query 268211 CCAGTTGCAATCACAAAGTCCTCTGGCTCAGGAGACTGGAGCATTTTCCACATTGCTTCG 268270
|| |||||||| ||||| || ||||| | | || | ||| ||||||||||||
Sbjct 3352 CCGGTTGCAATGACAAAATCTTCTGGTTGATCTTGTTGCATCATCAACCACATTGCTTCA 3411
Query 268271 ACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCAT 268330
|| || || || ||||||||||| || || | || | || || || | ||
Sbjct 3412 ACGTAATCTTTTGCGTGGCCCCAATCCCGTTTGGAATCAAGATTACCAAGCTCAATATAT 3471
Query 268331 TTCTGCTTG-CCGAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAACGT 268389
| || || || || | | |||| ||| ||||||||||||| ||||| |||||
Sbjct 3472 T-CTAATTCACCTAGATGAATTTTCGCAACACCTCGAGTGATTTTTCTTGTCACAAACGT 3530
Query 268390 CTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCATA 268449
|| || | | || || || ||||| || || || ||| |||||||| | ||
Sbjct 3531 TTCACCTCTTCTCGGTGATTCATGATTGAAAAGAATCCCATTGACAGCGAACATATCGTA 3590
Query 268450 TGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGA 268509
|| || || || || || || || |||| || || | ||| | || | || |||||
Sbjct 3591 AGCTTCTCGATAATTAACAACGATCGAGTAGGCGAATAGCTTCGATACGCCATAAGGAGA 3650
Query 268510 ACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTC 268569
||||||| || || ||||| ||| || |||| || || |||||| | | |||
Sbjct 3651 TCGTGGATAAAATGGAGTCGTTTCGGATTGTGGCGTTTCACGCACCTTGCCATACAACTC 3710
Query 268570 GGAGGTCGATGCTTGGTAGAACTTTGT 268596
|| || ||||| ||||| || ||
Sbjct 3711 TGATGTACTAGCTTGATAGAATTTGGT 3737
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921405127519200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |