Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq135 143 6e-29
seq8921 141 2e-28
seq718 141 2e-28
seq871 95.1 3e-14
>seq135
Length=1279
Score = 143 bits (158), Expect = 6e-29
Identities = 147/192 (77%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
|||||||||||||||||| ||| ||| || || || ||||| |||||||| || || ||
Sbjct 395 TTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCTTCCAATTGTTTACCAGCAAA 336
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
|||| ||| |||||| ||| || |||||||| ||||| ||||| ||||| || ||
Sbjct 335 AATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGTATTTTAGCTTTGACATT 276
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
||| |||| |||| | ||| ||||| | ||||| || || || |||| || || ||
Sbjct 275 TTCAATAGTATCGGAAGGTTCAACTTCCAAAGTGATTGTTTTTCCAGTCAATGTTTTCAC 216
Query 288462 GAATATCTGCAT 288473
||| ||||||||
Sbjct 215 GAAAATCTGCAT 204
Score = 141 bits (156), Expect = 2e-28
Identities = 149/195 (76%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
|||||||||||||||||| ||| ||| || || || ||||| |||||||| || || ||
Sbjct 623 TTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCTTCCAATTGTTTGCCAGCAAA 564
Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
|||||||| || ||| ||||| || ||||||||||| || ||||| ||||| ||
Sbjct 563 AATCAGACGTTGCTGA---TCTGGAGGAATACCTTCTTTATCTTGAATTTTAGCTTTGAC 507
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
||||| || | |||| | ||| ||||| | || || ||||| || |||| ||| ||
Sbjct 506 ATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGTAATGGTCTTTCCAGTCAAAGTTTT 447
Query 288459 GACGAATATCTGCAT 288473
||| || ||||||||
Sbjct 446 GACAAAAATCTGCAT 432
Score = 116 bits (128), Expect = 9e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | | ||| | || | ||| ||||||||| ||||| || |||
Sbjct 886 CCACCACGGAGACGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTC 827
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || | || ||||| |||||||| || || || |||| ||| |||||| |||
Sbjct 826 AATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 767
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| ||||||||||| || ||||| ||||| || ||||| || | |||| | ||| |||
Sbjct 766 ATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAACT 707
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| | || || || || || |||| || || ||||| ||||||||
Sbjct 706 TCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCAT 660
>seq8921
Length=5376
Score = 141 bits (156), Expect = 2e-28
Identities = 253/364 (70%), Gaps = 4/364 (1%)
Strand=Plus/Minus
Query 72429 TCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCT 72488
|||||||||||||| || |||| |||| || || | |||| ||||| ||||||||
Sbjct 3713 TCAGAGTTGTATGGCAAGGTGCGTGAAACGCCACAATCCGAAACGACTCCATTTTATCCA 3654
Query 72489 CGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAG 72548
||| ||||| || || | ||| | | ||| || | |||| | ||||| || ||
Sbjct 3653 CGATCTCCTTATGGCGTATCGAAGCTATTCGCCTACTCGATCGTTGTTAATTATCGAGAA 3594
Query 72549 TCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGGC 72608
| || | |||| | ||| |||| ||||||||| || || | |||||
Sbjct 3593 GCTTACGATATGTTCGCTGTCAATGGGATTCTTTTCAATCATGAATCACCGAGAAGAGGT 3534
Query 72609 CATCAGTTCGTGACTCGTAAAATCACGA-AGGTGGTCGCGAATATTT-TCAATGGTGTCG 72666
| ||| ||||| | |||||||| ||||| | ||||| ||| || | ||||
Sbjct 3533 GAAACGTTTGTGACAAGAAAAATCACTCGAGGTGTT-GCGAAAATTCATCTA-GGTGAAT 3476
Query 72667 AAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATT 72726
| ||| || | || |||||| | ||| ||||| | |||||||| | || || ||||
Sbjct 3475 TAGAATATATTGAGCTTGGTAATCTTGATTCCAAACGGGATTGGGGCCACGCAAAAGATT 3416
Query 72727 ACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAA 72786
|||| |||||||||||||||||| ||||||||||| || || || | ||| |||||||
Sbjct 3415 ACGTTGAAGCAATGTGGTTGATGATGCAACAAGATCAACCAGAAGATTTTGTCATTGCAA 3356
Query 72787 CAGG 72790
| ||
Sbjct 3355 CCGG 3352
>seq718
Length=674
Score = 141 bits (156), Expect = 2e-28
Identities = 170/230 (74%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||||| | || | ||| | ||| |||||||||||||||||| ||| |
Sbjct 272 CCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTG 213
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363
|| || || || ||||| |||||||| || ||||| |||| ||| ||||| ||||
Sbjct 212 AGAGTTCGACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTG---ATCTGGA 156
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || |||||||| || || ||||| ||||| || ||||| || | |||| | ||
Sbjct 155 GGAATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCA 96
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| | || || || || || |||| ||| || ||||| ||||||||
Sbjct 95 ACTTCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46
Score = 131 bits (144), Expect = 4e-25
Identities = 148/199 (74%), Gaps = 7/199 (4%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGA-------GCGTGCGTCCGTCTTCTAATTGTTTTC 288334
|||||||||||||||||| ||| || | || || || ||||| |||||||| |
Sbjct 472 TTCTTTTTGGATATTATAATCGCTGAGAGTTCNGAGTTCGACCATCTTCCAATTGTTTGC 413
Query 288335 CTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTT 288394
| ||||| |||| ||| |||||| ||| || |||||||| ||||| ||||| ||||
Sbjct 412 CAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGTATTTTAGCTT 353
Query 288395 TCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAG 288454
| || ||||| || | |||| | ||| ||||| | ||||| || || || |||| ||
Sbjct 352 TGACATTTTCAATTGTATCGGAAGGTTCAACTTCCAAAGTGATTGTTTTTCCAGTCAAAG 293
Query 288455 TCTTGACGAATATCTGCAT 288473
| || ||||| ||||||||
Sbjct 292 TTTTAACGAAAATCTGCAT 274
Score = 111 bits (122), Expect = 4e-19
Identities = 123/164 (75%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 288310 GTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATT 288369
|| || || ||||| |||||||| || ||||| |||| ||| |||||| ||| ||
Sbjct 672 GTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATA 613
Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429
||||||||||| || ||||| ||||| || ||||| |||| |||| | || |||||
Sbjct 612 CCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGCTCAACTTCC 553
Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| ||||| || || || |||| ||| || ||||| || |||||
Sbjct 552 AAAGTGATAGTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 509
>seq871
Length=12966
Score = 95.1 bits (104), Expect = 3e-14
Identities = 180/261 (69%), Gaps = 8/261 (3%)
Strand=Plus/Minus
Query 325394 TTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTC--CCTTGCAGAG 325451
||||| || ||||| |||||| ||| || || | || | ||||| | || |||
Sbjct 5075 TTGATATTGTTGCTCCCGACAAAATTTTGAGCTAAATTAATTATGGTTGACATTAAAGAC 5016
Query 325452 ATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCT 325511
|| |||||||||||||||||||||| | || ||||| |||| | |||||| || |
Sbjct 5015 AT--TTCGCCATGGTGATAGGCGCTAAGTTCACCAACGGAACCAGCCAGCTGTGCTACTT 4958
Query 325512 TCACGT--CGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGG 325569
| || | || | || ||| || |||||| | ||| |||||||| ||||| |||
Sbjct 4957 TGACTTCACGTTTATC--ATTACGTTTGAAACAAGTATAGATCACTTTTCGTTGGCCAGG 4900
Query 325570 TTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAAAAT 325629
||| |||||||| || | || ||||| ||||| ||| |||||||| ||
Sbjct 4899 TTTAAAACCATCGACTAAGGAAGGAATTGAACGTTCATTATCCATGTTTGAGAACAATAT 4840
Query 325630 AAGTTCCTTGTCGATGAAGTC 325650
| ||| || | ||| |||||
Sbjct 4839 CAATTCTTTATTGATAAAGTC 4819
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179369343887080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |