Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq135 143 6e-29 seq8921 141 2e-28 seq718 141 2e-28 seq871 95.1 3e-14 >seq135 Length=1279 Score = 143 bits (158), Expect = 6e-29 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||||||||| ||| ||| || || || ||||| |||||||| || || || Sbjct 395 TTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCTTCCAATTGTTTACCAGCAAA 336 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| ||| |||||| ||| || |||||||| ||||| ||||| ||||| || || Sbjct 335 AATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGTATTTTAGCTTTGACATT 276 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| |||| | ||| ||||| | ||||| || || || |||| || || || Sbjct 275 TTCAATAGTATCGGAAGGTTCAACTTCCAAAGTGATTGTTTTTCCAGTCAATGTTTTCAC 216 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 215 GAAAATCTGCAT 204 Score = 141 bits (156), Expect = 2e-28 Identities = 149/195 (76%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||||||||| ||| ||| || || || ||||| |||||||| || || || Sbjct 623 TTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCTTCCAATTGTTTGCCAGCAAA 564 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||||| || ||| ||||| || ||||||||||| || ||||| ||||| || Sbjct 563 AATCAGACGTTGCTGA---TCTGGAGGAATACCTTCTTTATCTTGAATTTTAGCTTTGAC 507 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | |||| | ||| ||||| | || || ||||| || |||| ||| || Sbjct 506 ATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGTAATGGTCTTTCCAGTCAAAGTTTT 447 Query 288459 GACGAATATCTGCAT 288473 ||| || |||||||| Sbjct 446 GACAAAAATCTGCAT 432 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | | ||| | || | ||| ||||||||| ||||| || ||| Sbjct 886 CCACCACGGAGACGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTC 827 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | || ||||| |||||||| || || || |||| ||| |||||| ||| Sbjct 826 AATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 767 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||||||||| || ||||| ||||| || ||||| || | |||| | ||| ||| Sbjct 766 ATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAACT 707 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || || || || || |||| || || ||||| |||||||| Sbjct 706 TCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCAT 660 >seq8921 Length=5376 Score = 141 bits (156), Expect = 2e-28 Identities = 253/364 (70%), Gaps = 4/364 (1%) Strand=Plus/Minus Query 72429 TCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCT 72488 |||||||||||||| || |||| |||| || || | |||| ||||| |||||||| Sbjct 3713 TCAGAGTTGTATGGCAAGGTGCGTGAAACGCCACAATCCGAAACGACTCCATTTTATCCA 3654 Query 72489 CGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAG 72548 ||| ||||| || || | ||| | | ||| || | |||| | ||||| || || Sbjct 3653 CGATCTCCTTATGGCGTATCGAAGCTATTCGCCTACTCGATCGTTGTTAATTATCGAGAA 3594 Query 72549 TCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGGC 72608 | || | |||| | ||| |||| ||||||||| || || | ||||| Sbjct 3593 GCTTACGATATGTTCGCTGTCAATGGGATTCTTTTCAATCATGAATCACCGAGAAGAGGT 3534 Query 72609 CATCAGTTCGTGACTCGTAAAATCACGA-AGGTGGTCGCGAATATTT-TCAATGGTGTCG 72666 | ||| ||||| | |||||||| ||||| | ||||| ||| || | |||| Sbjct 3533 GAAACGTTTGTGACAAGAAAAATCACTCGAGGTGTT-GCGAAAATTCATCTA-GGTGAAT 3476 Query 72667 AAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATT 72726 | ||| || | || |||||| | ||| ||||| | |||||||| | || || |||| Sbjct 3475 TAGAATATATTGAGCTTGGTAATCTTGATTCCAAACGGGATTGGGGCCACGCAAAAGATT 3416 Query 72727 ACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAA 72786 |||| |||||||||||||||||| ||||||||||| || || || | ||| ||||||| Sbjct 3415 ACGTTGAAGCAATGTGGTTGATGATGCAACAAGATCAACCAGAAGATTTTGTCATTGCAA 3356 Query 72787 CAGG 72790 | || Sbjct 3355 CCGG 3352 >seq718 Length=674 Score = 141 bits (156), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| | || | ||| | ||| |||||||||||||||||| ||| | Sbjct 272 CCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTG 213 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || || || ||||| |||||||| || ||||| |||| ||| ||||| |||| Sbjct 212 AGAGTTCGACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTG---ATCTGGA 156 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || |||||||| || || ||||| ||||| || ||||| || | |||| | || Sbjct 155 GGAATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCA 96 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || || || || || |||| ||| || ||||| |||||||| Sbjct 95 ACTTCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46 Score = 131 bits (144), Expect = 4e-25 Identities = 148/199 (74%), Gaps = 7/199 (4%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGA-------GCGTGCGTCCGTCTTCTAATTGTTTTC 288334 |||||||||||||||||| ||| || | || || || ||||| |||||||| | Sbjct 472 TTCTTTTTGGATATTATAATCGCTGAGAGTTCNGAGTTCGACCATCTTCCAATTGTTTGC 413 Query 288335 CTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTT 288394 | ||||| |||| ||| |||||| ||| || |||||||| ||||| ||||| |||| Sbjct 412 CAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGTATTTTAGCTT 353 Query 288395 TCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAG 288454 | || ||||| || | |||| | ||| ||||| | ||||| || || || |||| || Sbjct 352 TGACATTTTCAATTGTATCGGAAGGTTCAACTTCCAAAGTGATTGTTTTTCCAGTCAAAG 293 Query 288455 TCTTGACGAATATCTGCAT 288473 | || ||||| |||||||| Sbjct 292 TTTTAACGAAAATCTGCAT 274 Score = 111 bits (122), Expect = 4e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 288310 GTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATT 288369 || || || ||||| |||||||| || ||||| |||| ||| |||||| ||| || Sbjct 672 GTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATA 613 Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||||||||| || ||||| ||||| || ||||| |||| |||| | || ||||| Sbjct 612 CCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGCTCAACTTCC 553 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| || || || |||| ||| || ||||| || ||||| Sbjct 552 AAAGTGATAGTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 509 >seq871 Length=12966 Score = 95.1 bits (104), Expect = 3e-14 Identities = 180/261 (69%), Gaps = 8/261 (3%) Strand=Plus/Minus Query 325394 TTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTC--CCTTGCAGAG 325451 ||||| || ||||| |||||| ||| || || | || | ||||| | || ||| Sbjct 5075 TTGATATTGTTGCTCCCGACAAAATTTTGAGCTAAATTAATTATGGTTGACATTAAAGAC 5016 Query 325452 ATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCT 325511 || |||||||||||||||||||||| | || ||||| |||| | |||||| || | Sbjct 5015 AT--TTCGCCATGGTGATAGGCGCTAAGTTCACCAACGGAACCAGCCAGCTGTGCTACTT 4958 Query 325512 TCACGT--CGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGG 325569 | || | || | || ||| || |||||| | ||| |||||||| ||||| ||| Sbjct 4957 TGACTTCACGTTTATC--ATTACGTTTGAAACAAGTATAGATCACTTTTCGTTGGCCAGG 4900 Query 325570 TTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAAAAT 325629 ||| |||||||| || | || ||||| ||||| ||| |||||||| || Sbjct 4899 TTTAAAACCATCGACTAAGGAAGGAATTGAACGTTCATTATCCATGTTTGAGAACAATAT 4840 Query 325630 AAGTTCCTTGTCGATGAAGTC 325650 | ||| || | ||| ||||| Sbjct 4839 CAATTCTTTATTGATAAAGTC 4819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179369343887080