Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq8921 141 2e-28 seq871 129 1e-24 >seq8921 Length=5376 Score = 141 bits (156), Expect = 2e-28 Identities = 253/364 (70%), Gaps = 4/364 (1%) Strand=Plus/Minus Query 68418 TCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCT 68477 |||||||||||||| || |||| |||| || || | |||| ||||| |||||||| Sbjct 3713 TCAGAGTTGTATGGCAAGGTGCGTGAAACGCCACAATCCGAAACGACTCCATTTTATCCA 3654 Query 68478 CGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAG 68537 ||| ||||| || || | ||| | | ||| || | |||| | ||||| || || Sbjct 3653 CGATCTCCTTATGGCGTATCGAAGCTATTCGCCTACTCGATCGTTGTTAATTATCGAGAA 3594 Query 68538 TCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGGC 68597 | || | |||| | ||| |||| ||||||||| || || | ||||| Sbjct 3593 GCTTACGATATGTTCGCTGTCAATGGGATTCTTTTCAATCATGAATCACCGAGAAGAGGT 3534 Query 68598 CATCAGTTCGTGACTCGTAAAATCACGA-AGGTGGTCGCGAATATTT-TCAATGGTGTCG 68655 | ||| ||||| | |||||||| ||||| | ||||| ||| || | |||| Sbjct 3533 GAAACGTTTGTGACAAGAAAAATCACTCGAGGTGTT-GCGAAAATTCATCTA-GGTGAAT 3476 Query 68656 AAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATT 68715 | ||| || | || |||||| | ||| ||||| | |||||||| | || || |||| Sbjct 3475 TAGAATATATTGAGCTTGGTAATCTTGATTCCAAACGGGATTGGGGCCACGCAAAAGATT 3416 Query 68716 ACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAA 68775 |||| |||||||||||||||||| ||||||||||| || || || | ||| ||||||| Sbjct 3415 ACGTTGAAGCAATGTGGTTGATGATGCAACAAGATCAACCAGAAGATTTTGTCATTGCAA 3356 Query 68776 CAGG 68779 | || Sbjct 3355 CCGG 3352 >seq871 Length=12966 Score = 129 bits (142), Expect = 1e-24 Identities = 399/608 (66%), Gaps = 12/608 (2%) Strand=Plus/Minus Query 297170 CCTTTGAATCCTCGATACCACGGTTTCATTTCGACGAGATCTTC-TCCAGCAATCAATCG 297228 |||| || ||| ||||||||| |||||||| | | |||| | ||| |||| || Sbjct 5420 CCTTGAAAACCTTTATACCACGGATTCATTTCCATTGGTTCTTGATTGCGCA-TCAAACG 5362 Query 297229 CTTCACGTTGTCTACGATGTCTTTTGGATTGTAACTAGGGATATTAGTCGACCAACCGGT 297288 || | || |||||||| || | |||| || | || | || || |||||| || Sbjct 5361 TTTAATATTTTCTACGATAGCTCTAGGATCATAGTTCGGCACTTTGGTACTCCAACCAGT 5302 Query 297289 ACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCACATAATACTCTGG 297348 || ||||| | ||| ||||| | || | ||||| | || |||||||| || || Sbjct 5301 GCCAATTCCTTCAGCACCGTTCACTAAAACCATGGGAATGATTGGGACATAATATTCAGG 5242 Query 297349 TTCGATCTTGTCACCGTCATCATACAGATATTTCAGAAGATTATCGTCC-GTATCGACGA 297407 ||| || | ||||||||||| || || || | | ||| || || | | | Sbjct 5241 TTCAATACGAAGATTGTCATCATACATGTAGTTAAGTAAAGGATCATCAAGTGTTGGA-A 5183 Query 297408 AAACCTGTCGAGTCTGAGGGTTCAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCT 297467 ||| | || || | || | || | ||||||||||| || | || || ||| | Sbjct 5182 AAAGTTTTCTAGCCAAGGGACTGAGCATGGTGAAAATATAACGAGGGCTTGCAGCATCTT 5123 Query 297468 TACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGC 297527 | || || || | || | |||||| || || || ||| | ||||| || |||| Sbjct 5122 TGCCCCCTTGAAGTCGAGTACCGAATTGACCTAAAGGTTGCAATAAATTGATATTGTTGC 5063 Query 297528 TTCCGACATAATCCTGTGCAAGGTTCACGATGGTC--CCTTGCAGAGATGCTTCGCCATG 297585 | |||||| ||| || || | || | ||||| | || ||| || ||||||||| Sbjct 5062 TCCCGACAAAATTTTGAGCTAAATTAATTATGGTTGACATTAAAGACAT--TTCGCCATG 5005 Query 297586 GTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGT--CGGTC 297643 ||||||||||||| | || ||||| |||| | |||||| || || || | || | Sbjct 5004 GTGATAGGCGCTAAGTTCACCAACGGAACCAGCCAGCTGTGCTACTTTGACTTCACGTTT 4945 Query 297644 GTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCA 297703 || ||| || |||||| | ||| |||||||| ||||| |||||| |||||||| Sbjct 4944 ATC--ATTACGTTTGAAACAAGTATAGATCACTTTTCGTTGGCCAGGTTTAAAACCATCG 4887 Query 297704 ACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAAAATAAGTTCCTTGTCG 297763 || | || ||||| ||||| ||| |||||||| || | ||| || | | Sbjct 4886 ACTAAGGAAGGAATTGAACGTTCATTATCCATGTTTGAGAACAATATCAATTCTTTATTG 4827 Query 297764 ATGAAGTC 297771 || ||||| Sbjct 4826 ATAAAGTC 4819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102613495941000