Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq10223 138 1e-27 seq135 120 3e-22 seq718 100 3e-16 >seq10223 Length=44262 Score = 138 bits (152), Expect = 1e-27 Identities = 522/809 (65%), Gaps = 15/809 (2%) Strand=Plus/Plus Query 154626 TATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTC 154685 |||| ||||| || | ||| | |||| |||| |||||||| || ||||| ||||| Sbjct 20896 TATTCAACAATCTCGGTGCAAAGATTAGAGCATTTGATGGTGCCAAGATTTTTTTGATTA 20955 Query 154686 GATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTT 154745 ||||| | || || |||||||| | ||| | || || || |||||||| || | Sbjct 20956 GATTTTCTATTACAATGATCTTTGTAGACCATGAATGGTGTTCCGGTTTCCACCTGAGCA 21015 Query 154746 TCAATAATTGTGCGAAACAGACTTCGCGC-CTC-AACTTGACAAGTAAATCGATTTTCGC 154803 || | |||| |||| || | ||| || || || ||| | ||||||| || Sbjct 21016 TCGACTATTG--CGAACCAAAGTTCACGAGCTGGAATTTGTTTGCGATATCGATTCTCTT 21073 Query 154804 TCTCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGAC 154863 ||||||||| || || || ||| || ||| | | || || ||| || |||| Sbjct 21074 TCTCATATTTCTCATAGAGAGCTTCGAATTCTTCGCCCCAAACATCTTGCAATCCAGGAC 21133 Query 154864 AGCGGTCGGGACACATCAATGACCACATT---TCGTTTTGTTGTACGCGTTTCATAAACA 154920 | | ||| |||||||| ||||| | ||| ||| | | |||||||| |||| Sbjct 21134 ATTCTTTGGGGCACATCAACGACCAAACCCCATCGGTTTC--GCAA-CGTTTCATGAACA 21190 Query 154921 AATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGT 154980 ||||||| | ||| || || || || | ||| | || | ||||| | ||| | | Sbjct 21191 AATCCGGTATCCATAATGCATAGAAAAGATCTCTGGCACGTAATTCTTCTGAGCCAGTAT 21250 Query 154981 TTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCA 155040 |||| || ||||| ||||| || | || || || |||||||| || ||||||| || | Sbjct 21251 TTCGTTTCAAATTTAAAAAGTCGAAAATATCTGCATGCCACGGTTCCAAATATATTGCGA 21310 Query 155041 TCGCGCCTTTGCG---TTTTCCTCCTTGATCCACGTGACGCACACAATTATTGTACACGC 155097 || || || || || |||||||| || | ||| | || ||||| || | Sbjct 21311 AAGCACCAGGACGCTTATTACCACCTTGATCGACATAACGAGCGGTATCGTTGTAAACTC 21370 Query 155098 GCAACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCCACGTAT-CGCGCTGCCGCGA 155156 |||||| || ||| || | | || ||||||||| ||| || | || Sbjct 21371 GCAACATCGGAACCAAACCATTTGAATGACCTTTGGTGCCAACTATGTACGAT-CCATTT 21429 Query 155157 GCACGCGCTTTATGAACATTAACGCCCAAACCTCCGCCGTATTTAGATATTTGCGCACAG 155216 || || ||||||||||| || | || ||| | | || ||||| ||||| Sbjct 21430 GCTCGAATACAATGAACATTAAGACCGATGCCACCGGCTGACTTCGATATAATAGCACAT 21489 Query 155217 TCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACAC 155276 | ||| || ||||| || |||| || || || || || |||||| || ||||| Sbjct 21490 TGTTTCAACGTATCGTAAATACCTTCAATACTATCATCGGCCATCGTCAATAAAAAACAT 21549 Query 155277 GAAGATAATTGAGGTTGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAAC 155336 ||||| | |||||| || | || | ||| || ||||| ||||||||||| Sbjct 21550 GAAGACATTTGAGGATGGGTTGTACCAGAATTAAACAAAGTAGGTGAGGCGTGTGTAAAA 21609 Query 155337 ATTTTGTTGGCGGTTAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATA 155396 | || | ||| || || || |||||||| | ||||| || |||||| Sbjct 21610 AGACCTTTAGACATTAGATTATACGTCTCGATGGCCGAATCAATATCTTCTTTATGTATA 21669 Query 155397 CCGATCGCCACGCGCATCAGCATGTGTTG 155425 ||||| || || | ||||| ||| || || Sbjct 21670 CCGATGGCGACTCTCATCAACATATGCTG 21698 >seq135 Length=1279 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||||||||| || || ||||| || || || | ||||| | || ||||| Sbjct 628 GTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCTTCCAATTGTTTGCCA 569 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| || || ||||| || |||||||| |||||||| ||||| | |||| ||||| Sbjct 568 GCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCTTG-AATTTTAGCTTT 510 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | ||||| | |||||||| | ||| | |||||| || |||||||| Sbjct 509 GACATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGTAATGGTCTTTCCAGTCAAAGT 450 Query 64426 TTTTACGAAAATTTGCAT 64443 ||| || ||||| ||||| Sbjct 449 TTTGACAAAAATCTGCAT 432 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||||||||| |||||||| | || | | ||||| | || ||||| Sbjct 856 GTGGATTCTTTTTGAATATTGTAATCGCTCAATGTTCTACCATCTTCCAATTGTTTGCCA 797 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| | || || || || || ||||| |||||||| ||||| | |||| ||||| Sbjct 796 GCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTG-AATTTTAGCTTT 738 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | ||||| | || ||||| | ||| | ||| || || ||||| || Sbjct 737 GACATTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTCAATGT 678 Query 64426 TTTTACGAAAATTTGCAT 64443 ||| |||||||| ||||| Sbjct 677 TTTAACGAAAATCTGCAT 660 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||||||||| || || ||||| || || || | ||||| | || || || Sbjct 400 GTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCTTCCAATTGTTTACCA 341 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| | || || || || || ||||| |||||||| || |||| |||| ||||| Sbjct 340 GCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGTA-TTTTAGCTTT 282 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | ||||| | || ||||| | ||| | || || || ||||| || Sbjct 281 GACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTGATTGTTTTTCCAGTCAATGT 222 Query 64426 TTTTACGAAAATTTGCAT 64443 ||| |||||||| ||||| Sbjct 221 TTTCACGAAAATCTGCAT 204 >seq718 Length=674 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || | ||| | ||| | || ||||||||||| || || ||||| Sbjct 273 ACCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCT 214 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || || | ||||| | || || || || |||| | || || || || ||||| Sbjct 213 GAGAGTTCGACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGG 154 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||| |||||||| ||||| | |||| ||||| ||| || | ||||| | || | Sbjct 153 AATACCTTCTTTGTCTTG-AATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAA 95 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | ||| | ||| || || ||||||||||| |||||||| ||||| Sbjct 94 CTTCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/205 (71%), Gaps = 9/205 (4%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATC--TGCGA----CG-GTGCGCGCGTCTTCAAGCTG 64299 || ||||||||||| || || ||||| || || | || || | ||||| | || Sbjct 477 GTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCNGAGTTCGACCATCTTCCAATTG 418 Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||||| || |||| | || || || || || ||||| |||||||| || |||||||| Sbjct 417 TTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGTATTTT 358 Query 64360 TTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGG 64418 ||||| ||| || | |||||| | || ||||| | ||| | || || || | Sbjct 357 A-GCTTTGACATTTTCAATTGTATCGGAAGGTTCAACTTCCAAAGTGATTGTTTTTCCAG 299 Query 64419 TCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||| |||||||| ||||| Sbjct 298 TCAAAGTTTTAACGAAAATCTGCAT 274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499527008738400