Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq718 154 1e-32
seq135 145 5e-30
>seq718
Length=674
Score = 154 bits (170), Expect = 1e-32
Identities = 171/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || | || || || ||||| | || || |||||||| || || |||||||||
Sbjct 272 CCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTG 213
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
||| ||| | ||||| |||||||| |||||| | |||||||| ||||| || |||
Sbjct 212 AGAGTTCGACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 153
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| ||||| ||||| |||||| ||| ||| |||| || |||||| | || ||
Sbjct 152 ATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAACT 93
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| || ||||||||||| || |||| |||||| || ||||| ||||||
Sbjct 92 TCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCATA 45
Score = 141 bits (156), Expect = 7e-29
Identities = 155/205 (76%), Gaps = 7/205 (3%)
Strand=Plus/Minus
Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTC-----TCG--CGTCTTCTAATTG 15032
||||| |||||||| || || |||||||||||| ||| ||| | ||||| |||||
Sbjct 477 GTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCNGAGTTCGACCATCTTCCAATTG 418
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
|||||||||| | |||||||| ||||| || |||||| ||||| ||||| |||||
Sbjct 417 TTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGTATTTT 358
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
||| ||| |||| || |||||| | ||| || || || || || ||||| || ||
Sbjct 357 AGCTTTGACATTTTCAATTGTATCGGAAGGTTCAACTTCCAAAGTGATTGTTTTTCCAGT 298
Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177
|| |||||| || ||||| ||||||
Sbjct 297 CAAAGTTTTAACGAAAATCTGCATA 273
Score = 120 bits (132), Expect = 2e-22
Identities = 120/156 (77%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081
||||| ||||||||||||||| | |||||||| ||||| || |||||| ||||| ||
Sbjct 663 TCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTA 604
Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141
|| |||||| ||| ||| |||| ||||||||| | || || || || || ||
Sbjct 603 TCTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGCTCAACTTCCAAAGTGATA 544
Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
||||| || |||| |||||| || ||||||||||||
Sbjct 543 GTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCATA 508
>seq135
Length=1279
Score = 145 bits (160), Expect = 5e-30
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
||||||| || | | || || || || | ||||| |||||||| || || |||||||
Sbjct 660 TGCCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGC 601
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
||||| ||| | ||||| |||||||||||||| | |||| ||| || || || |
Sbjct 600 TGAGAGTTCGACCATCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAG 541
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
|||| ||||| || || |||||| ||| ||| |||| || |||||| | ||| |
Sbjct 540 GAATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCA 481
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
| || || |||||||| || || |||| |||||| |||||||| ||||||
Sbjct 480 CTTCCAAAGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCATA 431
Score = 140 bits (154), Expect = 2e-28
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15039
|| || |||||||| || ||||||||||| | |||| | ||||| ||||||||||||
Sbjct 856 GTGGATTCTTTTTGAATATTGTAATCGCTCAATGTTCTACCATCTTCCAATTGTTTGCCA 797
Query 15040 GCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTT 15099
|| | |||||||| ||||| || |||||| ||||| || || |||||| |||
Sbjct 796 GCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTGAATTTTAGCTTTG 737
Query 15100 ACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTT 15159
||| |||| || |||||| | ||| || || || ||||||||||| || |||| |||
Sbjct 736 ACATTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTCAATGTT 677
Query 15160 TTTACAAAAATTTGCAT 15176
|| || ||||| |||||
Sbjct 676 TTAACGAAAATCTGCAT 660
Score = 136 bits (150), Expect = 3e-27
Identities = 149/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15039
|| || |||||||| || || |||||||||||| ||| | ||||| |||||||| |||
Sbjct 400 GTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCTTCCAATTGTTTACCA 341
Query 15040 GCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTT 15099
|| | |||||||| ||||| || |||||| ||||| ||||| ||||| |||
Sbjct 340 GCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGTATTTTAGCTTTG 281
Query 15100 ACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTT 15159
||| |||| ||||||||| | ||| || || || || || ||||| || |||| |||
Sbjct 280 ACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTGATTGTTTTTCCAGTCAATGTT 221
Query 15160 TTTACAAAAATTTGCATA 15177
|| || ||||| ||||||
Sbjct 220 TTCACGAAAATCTGCATA 203
Score = 118 bits (130), Expect = 8e-22
Identities = 146/200 (73%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || | || || || ||||| | || || ||||| || || |||||||||||
Sbjct 202 CCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTC 143
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
| |||| | ||||| |||||||| |||||| | |||||||| ||||| || ||||
Sbjct 142 AATGTTCTACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGA 83
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| ||||| ||||| |||||| ||| ||| |||| || |||||| | ||| ||
Sbjct 82 ATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGTTCCACT 23
Query 15130 TCTAAGGTAATGGTTTTACC 15149
|| || || || ||||| ||
Sbjct 22 TCCAAAGTGATAGTTTTTCC 3
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357309851215100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |