Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq718 154 1e-32 seq135 145 5e-30 >seq718 Length=674 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || || || ||||| | || || |||||||| || || ||||||||| Sbjct 272 CCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTG 213 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| ||| | ||||| |||||||| |||||| | |||||||| ||||| || ||| Sbjct 212 AGAGTTCGACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 153 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| |||||| ||| ||| |||| || |||||| | || || Sbjct 152 ATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAACT 93 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||||||||| || |||| |||||| || ||||| |||||| Sbjct 92 TCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCATA 45 Score = 141 bits (156), Expect = 7e-29 Identities = 155/205 (76%), Gaps = 7/205 (3%) Strand=Plus/Minus Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTC-----TCG--CGTCTTCTAATTG 15032 ||||| |||||||| || || |||||||||||| ||| ||| | ||||| ||||| Sbjct 477 GTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCNGAGTTCGACCATCTTCCAATTG 418 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||||||| | |||||||| ||||| || |||||| ||||| ||||| ||||| Sbjct 417 TTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGTATTTT 358 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||| ||| |||| || |||||| | ||| || || || || || ||||| || || Sbjct 357 AGCTTTGACATTTTCAATTGTATCGGAAGGTTCAACTTCCAAAGTGATTGTTTTTCCAGT 298 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || |||||| || ||||| |||||| Sbjct 297 CAAAGTTTTAACGAAAATCTGCATA 273 Score = 120 bits (132), Expect = 2e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||| ||||||||||||||| | |||||||| ||||| || |||||| ||||| || Sbjct 663 TCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTA 604 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || |||||| ||| ||| |||| ||||||||| | || || || || || || Sbjct 603 TCTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGCTCAACTTCCAAAGTGATA 544 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || |||| |||||| || |||||||||||| Sbjct 543 GTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCATA 508 >seq135 Length=1279 Score = 145 bits (160), Expect = 5e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | || || || || | ||||| |||||||| || || ||||||| Sbjct 660 TGCCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGC 601 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||||| ||| | ||||| |||||||||||||| | |||| ||| || || || | Sbjct 600 TGAGAGTTCGACCATCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAG 541 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||| || || |||||| ||| ||| |||| || |||||| | ||| | Sbjct 540 GAATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCA 481 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || || |||||||| || || |||| |||||| |||||||| |||||| Sbjct 480 CTTCCAAAGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCATA 431 Score = 140 bits (154), Expect = 2e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15039 || || |||||||| || ||||||||||| | |||| | ||||| |||||||||||| Sbjct 856 GTGGATTCTTTTTGAATATTGTAATCGCTCAATGTTCTACCATCTTCCAATTGTTTGCCA 797 Query 15040 GCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTT 15099 || | |||||||| ||||| || |||||| ||||| || || |||||| ||| Sbjct 796 GCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTGAATTTTAGCTTTG 737 Query 15100 ACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTT 15159 ||| |||| || |||||| | ||| || || || ||||||||||| || |||| ||| Sbjct 736 ACATTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTCAATGTT 677 Query 15160 TTTACAAAAATTTGCAT 15176 || || ||||| ||||| Sbjct 676 TTAACGAAAATCTGCAT 660 Score = 136 bits (150), Expect = 3e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15039 || || |||||||| || || |||||||||||| ||| | ||||| |||||||| ||| Sbjct 400 GTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCTTCCAATTGTTTACCA 341 Query 15040 GCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTT 15099 || | |||||||| ||||| || |||||| ||||| ||||| ||||| ||| Sbjct 340 GCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGTATTTTAGCTTTG 281 Query 15100 ACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTT 15159 ||| |||| ||||||||| | ||| || || || || || ||||| || |||| ||| Sbjct 280 ACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTGATTGTTTTTCCAGTCAATGTT 221 Query 15160 TTTACAAAAATTTGCATA 15177 || || ||||| |||||| Sbjct 220 TTCACGAAAATCTGCATA 203 Score = 118 bits (130), Expect = 8e-22 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || || || ||||| | || || ||||| || || ||||||||||| Sbjct 202 CCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTC 143 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | |||| | ||||| |||||||| |||||| | |||||||| ||||| || |||| Sbjct 142 AATGTTCTACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGA 83 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| |||||| ||| ||| |||| || |||||| | ||| || Sbjct 82 ATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGTTCCACT 23 Query 15130 TCTAAGGTAATGGTTTTACC 15149 || || || || ||||| || Sbjct 22 TCCAAAGTGATAGTTTTTCC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357309851215100