Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq718 129 6e-25
seq135 116 4e-21
>seq718
Length=674
Score = 129 bits (142), Expect = 6e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||||||||||||||| | || || |||||||| ||||| |||||||
Sbjct 272 CCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTG 213
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || ||| ||| || | ||||| |||||| | ||||| || || ||||| |||||
Sbjct 212 AGAGTTCGACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 153
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTT-GAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| || || ||||| ||| ||| |||| || | ||| | || || | | ||| ||
Sbjct 152 ATACCTTCTTTGTCT-TGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAAC 94
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| | || | ||||| || |||| |||||| || |||||||||||
Sbjct 93 TTCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46
Score = 104 bits (114), Expect = 2e-17
Identities = 164/234 (70%), Gaps = 7/234 (3%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||||||||||| || | ||||| |||||||| ||||| |||||||
Sbjct 507 CCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTG 448
Query 126947 A----TC---GTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999
| || || ||| ||| || | ||||| |||||| | ||||| || || |||||
Sbjct 447 AGAGTTCNGAGTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATC 388
Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACT 127059
|| || || || || |||||| ||||| |||| | ||| | || || | |
Sbjct 387 TGGTGGAATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGAAGG 328
Query 127060 CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| ||||| | || | ||||| || |||| |||||| || |||||||||||
Sbjct 327 TTCAACTTCCAAAGTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274
>seq135
Length=1279
Score = 116 bits (128), Expect = 4e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||||||||||| || | ||||| |||||||| ||||| |||||||
Sbjct 658 CCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTG 599
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || ||| ||| || | ||||| ||||| | |||| || |||||||| |||||
Sbjct 598 AGAGTTCGACCATCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGA 539
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTT-GAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| || || || || ||| ||| |||| || | ||| | ||| || | | || ||
Sbjct 538 ATACCTTCTTTATCT-TGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCAC 480
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| | || | || || || |||| |||||| ||||||||||||||
Sbjct 479 TTCCAAAGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432
Score = 113 bits (124), Expect = 4e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||||| ||||| |||| || || |||||||||||||||||||||| |
Sbjct 886 CCACCACGGAGACGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTC 827
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || | | ||| || | ||||| ||||| | ||||| || || ||||| || ||
Sbjct 826 AATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 767
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTT-GAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| || || || || ||| ||| |||| || | ||| | ||| || | | || ||
Sbjct 766 ATACCTTCTTTATCT-TGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAAC 708
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
||| | || | ||||| || |||| ||||| || ||||||||||||
Sbjct 707 TTCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCATG 659
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||||||||||| |||| || || |||||||| ||||| |||||||
Sbjct 430 CCACCCCGGAGACGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGCTG 371
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || ||| ||| || | ||||| ||||| | ||||| || || ||||| || ||
Sbjct 370 AGAGTTCGACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 311
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| || || |||||| ||||| |||| | ||| | || || | | || |||
Sbjct 310 ATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAACT 251
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | ||||| || |||| ||||| || |||||||||||
Sbjct 250 TCCAAAGTGATTGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204
Score = 95.1 bits (104), Expect = 1e-14
Identities = 111/149 (74%), Gaps = 1/149 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||||||||||||||| | || || ||||| || ||||||||||||| |
Sbjct 202 CCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTC 143
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || | | ||| || | ||||| |||||| | ||||| || || ||||| || ||
Sbjct 142 AATGTTCTACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGA 83
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035
|| || || |||| | ||| ||| ||||
Sbjct 82 ATACCTTCTTTGT-CTTGAATTTTAGCTT 55
Score = 82.4 bits (90), Expect = 7e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||||||||||||||| | || || ||||| || ||||||||||||| |
Sbjct 1165 CCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTC 1106
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || | ||| || | ||||| ||||| | ||||| || |||||||| || ||
Sbjct 1105 AATGTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGCGGA 1046
Query 127007 ATGCC 127011
|| ||
Sbjct 1045 ATACC 1041
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475388700686400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |