Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq718 129 6e-25 seq135 116 4e-21 >seq718 Length=674 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||||||||||||| | || || |||||||| ||||| ||||||| Sbjct 272 CCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTG 213 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || | ||||| |||||| | ||||| || || ||||| ||||| Sbjct 212 AGAGTTCGACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 153 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTT-GAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || ||||| ||| ||| |||| || | ||| | || || | | ||| || Sbjct 152 ATACCTTCTTTGTCT-TGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAAC 94 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||||| || |||| |||||| || ||||||||||| Sbjct 93 TTCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46 Score = 104 bits (114), Expect = 2e-17 Identities = 164/234 (70%), Gaps = 7/234 (3%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||||||||| || | ||||| |||||||| ||||| ||||||| Sbjct 507 CCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTG 448 Query 126947 A----TC---GTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 | || || ||| ||| || | ||||| |||||| | ||||| || || ||||| Sbjct 447 AGAGTTCNGAGTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATC 388 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACT 127059 || || || || || |||||| ||||| |||| | ||| | || || | | Sbjct 387 TGGTGGAATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGAAGG 328 Query 127060 CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| | || | ||||| || |||| |||||| || ||||||||||| Sbjct 327 TTCAACTTCCAAAGTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274 >seq135 Length=1279 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||||||||| || | ||||| |||||||| ||||| ||||||| Sbjct 658 CCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTG 599 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || | ||||| ||||| | |||| || |||||||| ||||| Sbjct 598 AGAGTTCGACCATCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGA 539 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTT-GAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || || ||| ||| |||| || | ||| | ||| || | | || || Sbjct 538 ATACCTTCTTTATCT-TGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCAC 480 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || || || |||| |||||| |||||||||||||| Sbjct 479 TTCCAAAGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| ||||| |||| || || |||||||||||||||||||||| | Sbjct 886 CCACCACGGAGACGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTC 827 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | | ||| || | ||||| ||||| | ||||| || || ||||| || || Sbjct 826 AATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 767 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTT-GAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || || ||| ||| |||| || | ||| | ||| || | | || || Sbjct 766 ATACCTTCTTTATCT-TGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAAC 708 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| | || | ||||| || |||| ||||| || |||||||||||| Sbjct 707 TTCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCATG 659 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||||||||| |||| || || |||||||| ||||| ||||||| Sbjct 430 CCACCCCGGAGACGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGCTG 371 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || | ||||| ||||| | ||||| || || ||||| || || Sbjct 370 AGAGTTCGACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 311 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || |||||| ||||| |||| | ||| | || || | | || ||| Sbjct 310 ATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAACT 251 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| || |||| ||||| || ||||||||||| Sbjct 250 TCCAAAGTGATTGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||||||||||||| | || || ||||| || ||||||||||||| | Sbjct 202 CCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTC 143 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | | ||| || | ||||| |||||| | ||||| || || ||||| || || Sbjct 142 AATGTTCTACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGA 83 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 || || || |||| | ||| ||| |||| Sbjct 82 ATACCTTCTTTGT-CTTGAATTTTAGCTT 55 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||||||||||||| | || || ||||| || ||||||||||||| | Sbjct 1165 CCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTC 1106 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| || | ||||| ||||| | ||||| || |||||||| || || Sbjct 1105 AATGTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGCGGA 1046 Query 127007 ATGCC 127011 || || Sbjct 1045 ATACC 1041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475388700686400