Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq10223 212 6e-50 seq718 176 4e-39 seq135 172 5e-38 seq4581 107 2e-18 seq620 84.2 2e-11 >seq10223 Length=44262 Score = 212 bits (234), Expect = 6e-50 Identities = 712/1099 (65%), Gaps = 31/1099 (3%) Strand=Plus/Minus Query 123237 ATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGCAAA---CGCAAA 123293 ||| ||||||||||||| | ||| || | ||||| || || || || || Sbjct 21377 ATGTTGCGAGTTTACAACGATACCGCTCGTTATGTCGATCAAGGTGGTAATAAGCGTCCT 21318 Query 123294 GGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTA 123353 || || | || || ||| | ||||||||||| | ||| | | ||| ||||||||||| Sbjct 21317 GGTGCTTTCGCAATATATTTGGAACCGTGGCATGCAGATATTTTCGACTTTTTAAATTTG 21258 Query 123354 AAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTA 123413 ||||| || | || | |||||| ||| | ||| | || || || |||||| || Sbjct 21257 AAACGAAATACTGGCTCAGAAGAATTACGTGCCAGAGATCTTTTCTATGCATTATGGATA 21198 Query 123414 CCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGAT 123473 || |||||||| ||| ||| || ||| || || |||||| | ||||| ||| | Sbjct 21197 CCGGATTTGTTCATGAAACGTTGCGAAACCGATGGGGTTTGGTCGTTGATGTGCCCCAAA 21138 Query 123474 CGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATAC 123533 ||||| || ||| || |||| ||| | | || || | | || | | |||| Sbjct 21137 GAATGTCCTGGATTGCAAGATGTTTGGGGCGAAGAATTCGAAGCTCTCTATGAGAAATAT 21078 Query 123534 GAGC--GCGAAGGCAAACAGGTTAGTCAGGTTCCGGCACGTGA---TTTGTTCAAATTTA 123588 ||| | ||| | | | | || |||| || ||||| || |||| | | Sbjct 21077 GAGAAAGAGAATCGATATCGCAAA--CAAATTCCAGCTCGTGAACTTTGGTTCGCA---A 21023 Query 123589 TTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACA 123648 | |||| | || || ||||||||||| || | |||| |||||||||| || || | Sbjct 21022 TAGTCGATGCTCAGGTGGAAACCGGAACACCATTCATGGTCTACAAAGATCATTGTAATA 20963 Query 123649 GGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTA 123708 | ||| | ||||| | || | || || || ||||| |||||||||| |||| ||| Sbjct 20962 GAAAATCTAATCAAAAAAATCTTGGCACCATCAAATGCTCTAATCTTTGCACCGAGATTG 20903 Query 123709 TCGAATA--CAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGA- 123765 | ||||| || || | || || | || || |||||| | |||||| || |||| | Sbjct 20902 TTGAATATTCATCGC--CAGACGAAATAGCTGTTTGTAATCTAGCTTCGGTT-GCGTTAC 20846 Query 123766 ----ATCGTTGCGTCGAAAACGGCGCTTTTA--ATTTCCAAACGCTCAAACGCATAACAA 123819 || | || |||| | | || |||| | | | ||| ||| | | Sbjct 20845 CAAAATTTGTCAATCAAAAAAATCTATCCTACGATTTTGGAGAGTTGAAAAACATCATCA 20786 Query 123820 AAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAG 123879 || | | || |||||||||||||| || ||||| |||| |||||| ||| ||||| Sbjct 20785 AAGTTATGACGAAAAATTTGAACAAAATAATTGATGTAAATTATTATCCCTTGCCGGAAG 20726 Query 123880 CGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACG 123939 | ||| || ||| || |||||||||| | ||| | ||| | ||||| | || || | Sbjct 20725 CTCGTCGTTCAAATATGCGACACAGACCGATTGGAATCGGCGTACAAGGTCTAGCTGATG 20666 Query 123940 CGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGC---AAAGTTGCTTAATACGC 123996 |||| | |||| | || | ||||| || ||||| ||| ||| |||| | Sbjct 20665 CGTTCATTTTGCTTAGATATCCTTTTGAAAGTGATGAAGCGAAAAAATTG---AATATAC 20609 Query 123997 AAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTC 124056 |||| ||||||||| |||||||| || || ||||| ||||| ||| | || || | Sbjct 20608 AAATTTTCGAAACAATCTATTACGGAGCATTAGAGGCTAGCTGTGAATTAGCTGCTATCC 20549 Query 124057 ACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACA 124116 | || | || |||| || | || || || ||||||| | || ||||| | Sbjct 20548 ATGGACCTTATGAAACCTATGAAGGATCTCCCGCATCGAAAGGTATTCTCCAATACGATA 20489 Query 124117 TGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGA 124176 ||||| || | ||| || || | ||||| ||| || ||| || || | | Sbjct 20488 TGTGGGATCGCAAACCTACCGATCTCTGGGATTGGGAAAAATTGAAAGAAAATATTGCTA 20429 Query 124177 CGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAA 124236 ||||| | || || || | || || |||||||| ||| | || ||||||| Sbjct 20428 AATACGGTCTACGAAATAGTCTTCTAGTTGCTCCGATGCCGACCGCATCGACAGCTCAAA 20369 Query 124237 TTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGT 124296 | ||||||||||| ||||| || || || | |||| ||| | || || |||| | Sbjct 20368 TCTTAGGAAACAATGAATCATTTGAACCATACACTTCCAACATTTATAATCGGAGAGTTT 20309 Query 124297 TAGCCGGCGATTTTCAAGT 124315 || | ||||| ||||| || Sbjct 20308 TATCAGGCGAATTTCAGGT 20290 >seq718 Length=674 Score = 176 bits (194), Expect = 4e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | |||||| | ||||| || ||||| |||||||||||||||||| Sbjct 275 ATACCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCG 216 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 |||| ||| | ||| ||||||||||| || ||| | ||||| ||||| || || || Sbjct 215 CTGAGAGTTCGACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGA 156 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| |||||||| ||||||||||| ||||| ||| | || ||||||| ||| Sbjct 155 GGAATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCA 96 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||||| ||||| || || | |||||| || ||||| ||||| Sbjct 95 ACTTCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46 Score = 145 bits (160), Expect = 7e-30 Identities = 175/237 (74%), Gaps = 7/237 (3%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | |||||| | |||| || ||||| |||||||||||||||||| Sbjct 510 ATACCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCG 451 Query 45171 CTGACGGTT-----TTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTG 45223 |||| ||| || || ||| ||||||||||| || ||| | ||||| ||||| || Sbjct 450 CTGAGAGTTCNGAGTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTG 391 Query 45224 GTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGA 45283 || || ||||| |||||||| || || ||||| ||||| ||| | || ||||| Sbjct 390 ATCTGGTGGAATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGA 331 Query 45284 AGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | ||| | ||||| || || | |||||| || ||||| ||||| Sbjct 330 AGGTTCAACTTCCAAAGTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274 Score = 123 bits (136), Expect = 2e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| ||||||||||| || ||| | ||||| ||||| || || || ||||| |||||||| Sbjct 664 ATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTT 605 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||||||||| ||||| ||| | || ||||||| ||| ||||| | ||| | Sbjct 604 ATCTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGCTCAACTTCCAAAGTGAT 545 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | |||||| || ||||||||||| Sbjct 544 AGTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 509 >seq135 Length=1279 Score = 172 bits (190), Expect = 5e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | |||||| | |||| || ||||| |||||||||||||||||| Sbjct 661 ATGCCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCG 602 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 |||| ||| | ||| ||||||||||| || || | |||| |||||||| || || Sbjct 601 CTGAGAGTTCGACCATCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGA 542 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| |||||||||||||||||||| ||||| ||| | ||| ||||||| || Sbjct 541 GGAATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCC 482 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||||| || || || || | |||||| |||||||| ||||| Sbjct 481 ACTTCCAAAGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432 Score = 149 bits (164), Expect = 6e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | ||| || | || | || ||||| ||||| ||||| |||||| Sbjct 889 ATACCACCACGGAGACGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCG 830 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | ||| || ||| ||||||||||| || || | ||||| ||||| || || || Sbjct 829 CTCAATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGT 770 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| |||||||||||||||||||| ||||| ||| | ||| ||||||| || Sbjct 769 GGAATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCA 710 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||||| ||||| || || | ||||| || ||||| ||||| Sbjct 709 ACTTCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCAT 660 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | |||||| | || | || ||||| |||||||||||||||||| Sbjct 433 ATACCACCCCGGAGACGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCG 374 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 |||| ||| | ||| ||||||||||| || || | ||||| ||||| || || || Sbjct 373 CTGAGAGTTCGACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGT 314 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| |||||||| || || ||||| ||||| ||| | || ||||||| || Sbjct 313 GGAATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCA 254 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | ||||| || || | ||||| || ||||| ||||| Sbjct 253 ACTTCCAAAGTGATTGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204 Score = 136 bits (150), Expect = 4e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | |||||| | ||||| || ||||| || |||||||| |||||| Sbjct 205 ATACCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCG 146 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | ||| || ||| ||||||||||| || ||| | ||||| ||||| || || || Sbjct 145 CTCAATGTTCTACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGT 86 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| |||||||| ||||||||||| ||||| ||| | || ||||||| || Sbjct 85 GGAATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGTTCC 26 Query 45291 ACTTCGAGAGTAACCGTTTTGCC 45313 ||||| | ||| | ||||| || Sbjct 25 ACTTCCAAAGTGATAGTTTTTCC 3 Score = 98.7 bits (108), Expect = 9e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | |||||| | ||||| || ||||| || |||||||| |||||| Sbjct 1168 ATACCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCG 1109 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | ||| | ||| ||||||||||| || || | ||||| |||||||| || ||| Sbjct 1108 CTCAATGTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGC 1049 Query 45231 GGAATGCCT 45239 ||||| ||| Sbjct 1048 GGAATACCT 1040 >seq4581 Length=275 Score = 107 bits (118), Expect = 2e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| || | ||||| |||||||| || || || ||||||||| Sbjct 118 ATACCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTCTGAATGTTATAATCG 177 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | ||| || ||| ||||||||||| || || | || | |||||||| || || Sbjct 178 CTCAATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATTAGACGTTGCTGATCTGGA 237 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGA 45264 ||||| |||||||||||||| ||||| ||||| Sbjct 238 GGAATACCTTCTTTATCTTGGATTTTAGCTTTGA 271 >seq620 Length=8710 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 |||| |||||||||||||||||||| ||||| ||| | ||| ||||||| || | Sbjct 8710 GAATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCA 8651 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| | ||| | ||||| || || | |||||| |||||||| ||||| Sbjct 8650 CTTCCAAAGTGATAGTTTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 8602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451896640245600