Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq10223 159 4e-34 >seq10223 Length=44262 Score = 159 bits (176), Expect = 4e-34 Identities = 455/693 (66%), Gaps = 16/693 (2%) Strand=Plus/Plus Query 115902 ATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 115961 ||| ||||||| |||||||| ||||| | |||||||| || |||||||| ||||| || Sbjct 20322 ATAAATGTTGGAAGTGTATGGTTCAAATGATTCATTGTTTCCTAAGATTTGAGCTGTCGA 20381 Query 115962 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTC 116021 || || ||||| || || | ||||| || || || ||||| ||| ||| Sbjct 20382 TGCGGTCGGCATCGGAGCAACTAGAAGACTATTTCGTAGACCGTATTTAGCAATATTTTC 20441 Query 116022 CTTGAGGGCGTCCCAGTCGTAG---TTG--AGCTTTGTCTCCCCCTCCCACATATCAAAC 116076 || | ||||| || || | | || |||| | ||||||||||| | Sbjct 20442 TTTCAATTTTTCCCAATCCCAGAGATCGGTAGGTTTG-----CGATCCCACATATCGTAT 20496 Query 116077 TGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC 116136 ||||| ||||||| || || || ||||| ||| | || ||||| || || | | | Sbjct 20497 TGGAGAATACCTTTCGATGCGGGAGATCCTTCATAGGTTTCATAAGGTCCATGGATAGCA 20556 Query 116137 GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTC 116196 || ||||| |||| ||||| | ||| ||| ||| ||||| || ||||| | |||| Sbjct 20557 GCTAATTCACAGCTAGCCTCTAATGCTCCGTAATAGATTGTTTCGAAAATTTGTATATTC 20616 Query 116197 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGA-CGGCACAAAATAAATACATCCGCGAG 116255 | | || || || || ||||| | || | | |||||| || |||| || || Sbjct 20617 AATTTTTTCGCTTCATCACTTTCAAAAG-GATATCTAAGCAAAATGAACGCATCAGCTAG 20675 Query 116256 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCAC 116315 |||||| || |||| ||||| || | |||| |||||| || ||||| | || Sbjct 20676 ACCTTGTACGCCGATTCCAATCGGTCTGTGTCGCATATTTGAACGACGAGCTTCCGGCAA 20735 Query 116316 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 116375 ||||||| |||| ||| || | | || | |||||| || | ||| || |||| | Sbjct 20736 GGGATAATAATTTACATCAATTATTTTGTTCAAATTTTTCGTCATAACTTTGATGATGTT 20795 Query 116376 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 116435 | | || | | |||| | || | | || ||||||| | || || | || | Sbjct 20796 TTTCAACTCTCCAAAATCGTAGGATAGATTTTTTTGATTGACAAATTTTGGTAACGCAAC 20855 Query 116436 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG--TACTCTATAATTTCCGTA 116493 || || |||||||| |||| | || || | | || || || | ||| || || Sbjct 20856 CGAAGCTAGATTACAAACAGCTATTTCGTC--TGGCGATGAATATTCAACAATCTCGGTG 20913 Query 116494 CACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 116553 || | ||| || | || |||||||| | || |||||||| || ||| | ||||| | Sbjct 20914 CAAAGATTAGAGCATTTGATGGTGCCAAGATTTTTTTGATTAGATTTTCTATTACAATGA 20973 Query 116554 TCCTTGTAGAGCATATATGGCGTCCCCGTCTCC 116586 || ||||||| ||| |||| || || || ||| Sbjct 20974 TCTTTGTAGACCATGAATGGTGTTCCGGTTTCC 21006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613362565677600