Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq135 125 5e-24 seq718 122 6e-23 seq4581 93.3 3e-14 >seq135 Length=1279 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||| || |||||| ||||||||| |||||||||||| Sbjct 430 CCACCCCGGAGACGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGCTG 371 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || |||| ||||||||||| || ||||||| ||||| || ||||| | || Sbjct 370 AGAGTTCGACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 311 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| |||||| ||| | | | | || || | ||| || Sbjct 310 ATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAACT 251 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| |||||||| || || || ||||| ||||| |||||||| Sbjct 250 TCCAAAGTGATTGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||||| ||||| |||||||| ||||||||| |||||||||||| Sbjct 659 GCCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCT 600 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | || |||| ||||||||||| || ||||||| | ||| |||||||| | || Sbjct 599 GAGAGTTCGACCATCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGG 540 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | |||||||| || ||||| ||| | | | | || || | |||||| Sbjct 539 AATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCAC 480 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| || || || || |||||||| || || |||||||| Sbjct 479 TTCCAAAGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| |||||| || |||||| ||||||||| ||||| |||||| | Sbjct 886 CCACCACGGAGACGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTC 827 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || | |||| ||||||||||| || ||||||| ||||| || ||||| | || Sbjct 826 AATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 767 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||| || ||||| ||| | | | | || || | ||| || Sbjct 766 ATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAACT 707 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||||||||| ||||| || || || ||||| ||||| ||||||||| Sbjct 706 TCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCATG 659 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 |||| ||||||||||||||| |||||| || ||||| |||||| ||| | || Sbjct 190 CGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTCAATGTTCTACCA 131 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || ||||||||||| || | ||||| ||||| || ||||| | || | ||||||||| Sbjct 130 TCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTG 71 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || ||||| ||| | | | | || || | |||||| |||||||| || Sbjct 70 TCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGTTCCACTTCCAAAGTGATA 11 Query 39685 GTTTTACC 39692 ||||| || Sbjct 10 GTTTTTCC 3 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 |||| ||||||||||||||| |||||| || ||||| |||||| ||| | || Sbjct 1153 CGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTCAATGTTCTGCCA 1094 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATC 39605 || ||||||||||| || ||||||| ||||| |||||||| Sbjct 1093 TCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGATC 1053 >seq718 Length=674 Score = 122 bits (134), Expect = 6e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 |||| ||||||||||||||| ||||||||| |||||||||||| | | || || Sbjct 260 CGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCA 201 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || ||||||||||| || | ||||| ||||| || ||||| | || | ||||||||| Sbjct 200 TCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTG 141 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || ||||| ||| | | | | || || | || || ||||||||||| Sbjct 140 TCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAACTTCCAAAGTAATG 81 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || |||||||| ||||| |||||||| Sbjct 80 GTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46 Score = 118 bits (130), Expect = 7e-22 Identities = 167/234 (71%), Gaps = 7/234 (3%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||| |||||||| ||||||||| |||||||||||| Sbjct 507 CCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTG 448 Query 39553 AAAA---CGCGTTC----ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATC 39605 | | | |||| ||| ||||||||||| || | ||||| ||||| || ||||| Sbjct 447 AGAGTTCNGAGTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATC 388 Query 39606 CGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCT 39665 | || | ||||||||||| |||||| ||| | | | | ||| || | Sbjct 387 TGGTGGAATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGAAGG 328 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || |||||||| |||||||| || || |||||||| ||||| |||||||| Sbjct 327 TTCAACTTCCAAAGTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274 >seq4581 Length=275 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||||||||||||| |||||| || || ||||||||| | Sbjct 121 CCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTCTGAATGTTATAATCGCTC 180 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || | |||| ||||||||||| || ||||||||| ||| |||||||| | || Sbjct 181 AATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATTAGACGTTGCTGATCTGGAGGA 240 Query 39613 ACGCCTTCTTTGTC 39626 | |||||||| || Sbjct 241 ATACCTTCTTTATC 254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347289754926380