Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4298 185 9e-42 seq718 107 2e-18 >seq4298 Length=5336 Score = 185 bits (204), Expect = 9e-42 Identities = 584/896 (65%), Gaps = 18/896 (2%) Strand=Plus/Minus Query 132595 ACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAG 132654 || ||| |||||||||||| | || ||| || |||||||||||||| |||||||| Sbjct 2295 ACACCACTTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAA 2236 Query 132655 GAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGG 132714 || || | ||| ||| || || || ||| ||||| ||| | ||| Sbjct 2235 GAGATCTGTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCCAGC 2176 Query 132715 TCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGT 132774 ||||| | || | || || | | |||||||| | ||| || ||| | | Sbjct 2175 TCGACCAACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGATT 2116 Query 132775 CCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCG 132834 || | || || |||| || ||||| | ||| |||||| || ||||||| | | Sbjct 2115 CCGATCAAGGAGACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCTTTG 2056 Query 132835 GTGACGAT-TTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAA 132893 ||||| || ||| | | ||| | | | ||| || | || ||| | ||| Sbjct 2055 GTGACAATCTTCAAGATCTTCACCCGAGAAGGTCGATTG-ACGATGTGTCGGAAAAGCAA 1997 Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 |||||||| || ||||| | || || || | || || | ||| || ||||||||||| Sbjct 1996 ACAAGCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGTCAA 1937 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 ||| ||||| || || |||||||| |||||||| || || || || ||| || || || Sbjct 1936 GCCAGGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAAAA 1877 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCT-TCTTTGCTGG 133072 || || |||||||| ||||| || || || || || | || | || | | || | Sbjct 1876 GATTCCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCATCTTG 1817 Query 133073 CGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGT 133132 | |||| | | ||||||| || || | | ||| || |||| |||| ||||| | Sbjct 1816 AG-TCCATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGCAT 1758 Query 133133 TCAACAAACGGAGTTTCTCTTCCGAGGAAC--GCACGTAGGTGTCGATGAGGGTCGAATA 133190 | | ||| | | ||||| | | | ||||| | |||||| |||||| Sbjct 1757 TGA--AAAGAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGAATA 1700 Query 133191 CATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGAC 133250 |||||| ||||| | || || |||||||| ||||| || ||||| || || ||||| Sbjct 1699 CATTTCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGG 1640 Query 133251 CACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGC 133310 | ||| || || || ||||||||| | ||||| || || || || || || || || Sbjct 1639 TATCTGAACATCACGAATGAAACGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGC 1580 Query 133311 GGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAA-GCGCTCCC 133369 || || || || | ||| || ||||||||| || || | ||||| | | ||| Sbjct 1579 AGCAAAGAATGCTAACACATGAGAGATGAAATGTTTTTCATTCTTATTCAACGAGTTCCA 1520 Query 133370 A----GTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCG 133425 | | | || | | | | || || || ||||| ||||||||||| ||||| Sbjct 1519 ATGATCTAGATCGCGACTT-----AAATCGACTTCTTCGACTGTCCAAAACGATGCCTCC 1465 Query 133426 GCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCG 133481 ||||| |||||||| ||| || || ||||| || ||||| | ||||| || Sbjct 1464 GCTTTCTTGTACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATCG 1409 >seq718 Length=674 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| | || || |||||||| || | || || ||| | || Sbjct 46 ATGCAGATTTTCGTGAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTTGAGCCTTCC 105 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || ||| | | |||| ||||| | |||||||| || ||||| | || || Sbjct 106 GATACGATTGAAAATG-TCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCA 164 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | |||| ||| || ||||| |||| || | || || |||| ||| || || Sbjct 165 ACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAA 224 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| ||| | || ||||||||||| |||| Sbjct 225 TATCCAAAAAGAATCCACTTTGCATTTGGTGTTGCG 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500054884262400