Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq10223 136 5e-27 seq8921 123 3e-23 >seq10223 Length=44262 Score = 136 bits (150), Expect = 5e-27 Identities = 306/457 (67%), Gaps = 2/457 (0%) Strand=Plus/Minus Query 112533 ACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAA 112592 || ||||| | |||| | | |||||| ||||| ||| ||| | | |||||| Sbjct 20777 ACGAAAAATTTGAACAAAATAATTGATGTAAATTATTATCCCTTGCCGGAAGCTCGTCGT 20718 Query 112593 TCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT 112652 || |||||| ||||| | || ||||| |||| || |||||||| || |||| |||||| Sbjct 20717 TCAAATATGCGACACAGACCGATTGGAATCGGCGTACAAGGTCTAGCTGATGCGTTCATT 20658 Query 112653 CTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAG 112712 | | | | | ||||| || |||||||| || | ||| | || || || Sbjct 20657 TTGCTTAGATATCCTTTTGAAAGTGATGAAGCGAAAAAATTGAATATACAAATTTTCGAA 20598 Query 112713 ACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATAT 112772 ||||| ||| ||| || | ||||| || | || || || | | |||| || ||| Sbjct 20597 ACAATCTATTACGGAGCATTAGAGGCTAGCTGTGAATTAGCTGCTATCCATGGACCTTAT 20538 Query 112773 GAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGT 112832 ||||||| ||| || ||||| || || |||| | || |||| ||||||||||| | Sbjct 20537 GAAACCTATGAAGGATCTCCCGCATCGAAAGGTATTCTCCAATACGATATGTGGGATCG- 20479 Query 112833 GAGACCAAGC-TTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCT 112891 | ||| | | || || || ||||| | || ||| || | | ||||| Sbjct 20478 CAAACCTACCGATCTCTGGGATTGGGAAAAATTGAAAGAAAATATTGCTAAATACGGTCT 20419 Query 112892 TCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAA 112951 || || |||||| | | || || ||||| || || || || || |||||||| || || Sbjct 20418 ACGAAATAGTCTTCTAGTTGCTCCGATGCCGACCGCATCGACAGCTCAAATCTTAGGAAA 20359 Query 112952 TAATGAATGCTTTGAACCCTACACGACGAACATCTAT 112988 ||||||| |||||||| ||||| | ||||| ||| Sbjct 20358 CAATGAATCATTTGAACCATACACTTCCAACATTTAT 20322 >seq8921 Length=5376 Score = 123 bits (136), Expect = 3e-23 Identities = 270/399 (68%), Gaps = 4/399 (1%) Strand=Plus/Minus Query 13597 TCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGG 13656 |||||||||| | |||||||| ||| ||| ||||| || | |||||| ||| Sbjct 3730 TCTATCAAGCTAGTACATCAGAGTTGTATGGCAAGGTGCGTGAAACGCCACAATCCGAAA 3671 Query 13657 AGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCG 13716 ||| || || || ||||| || || || || || ||| | || | | | ||| Sbjct 3670 CGACTCCATTTTATCCACGATCTCCTTATGGCGTATCGAAGCTATTCGCCTACTCGATCG 3611 Query 13717 TAAAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAACCATG 13776 | ||||| || || |||||| |||| || | || || || ||||| |||| Sbjct 3610 TTGTTAATTATCGAGAAGCTTACGATATGTTCGCTGTCAATGGGATTCTTTTCAATCATG 3551 Query 13777 AATCACCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTAC-CGAGG-GTATCAAACA 13834 ||||||||||| |||||| | |||||||| | || || || ||||| || | || | Sbjct 3550 AATCACCGAGAAGAGGTGAAACGTTTGTGACAAGAAAAATCACTCGAGGTGTTGCGAA-A 3492 Query 13835 AATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTG 13894 | |||| | |||||| || | ||||| | ||||| | | | | | ||||| Sbjct 3491 ATTCATCTA-GGTGAATTAGAATATATTGAGCTTGGTAATCTTGATTCCAAACGGGATTG 3433 Query 13895 GGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGA 13954 ||| ||||| || || || |||||||| |||||| | ||| | |||||||| || | || Sbjct 3432 GGGCCACGCAAAAGATTACGTTGAAGCAATGTGGTTGATGATGCAACAAGATCAACCAGA 3373 Query 13955 CGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTGAG 13993 || | ||| | ||||| ||||| | |||||||| || Sbjct 3372 AGATTTTGTCATTGCAACCGGTGAAGCTCATTCAGTCAG 3334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620596059979200