Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq10223 178 2e-39 seq8921 120 4e-22 >seq10223 Length=44262 Score = 178 bits (196), Expect = 2e-39 Identities = 456/688 (66%), Gaps = 6/688 (1%) Strand=Plus/Plus Query 105934 ATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 105993 ||| ||||| | ||||| |||||||| ||||||| || || |||||||| || || || Sbjct 20322 ATAAATGTTGGAAGTGTATGGTTCAAATGATTCATTGTTTCCTAAGATTTGAGCTGTCGA 20381 Query 105994 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTC 106053 || || ||||| || || | | |||||| || || ||||| | || || ||| Sbjct 20382 TGCGGTCGGCATCGGAGCAACTAGAAGACTATTTCGTAGACCGTATTTAGCAATATTTTC 20441 Query 106054 CTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATATCAAATTGA 106111 || | ||||| || || || | | ||||| | ||||||||||| |||| Sbjct 20442 TTTCAATTTTTCCCAATCCCAGA-GATCGGTAGGTTTG-CGATCCCACATATCGTATTGG 20499 Query 106112 AGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCC 106171 || | |||| || | |||||| || ||| | || ||||| | || ||| |||| Sbjct 20500 AGAATACCTTTCGATGCGGGAGATCCTTCATAGGTTTCATAAGGTCCATGGATAGCAGCT 20559 Query 106172 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 106231 ||||||||||| ||||| | | | ||| ||| || ||||| || || | ||||| Sbjct 20560 AATTCACAGCTAGCCTCTAATGCTCCGTAATAGATTGTTTCGAAAATTTGTATATTCAAT 20619 Query 106232 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCT 106291 | || |||||||| ||||| | || | |||||| || |||| || |||||| Sbjct 20620 TTTTTCGCTTCATCACTTTCAAAAGGATATCTAAGCAAAATGAACGCATCAGCTAGACCT 20679 Query 106292 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGA 106351 || || || | ||||| ||||||||||||||||| || || || | | |||| Sbjct 20680 TGTACGCCGATTCCAATCGGTCTGTGTCGCATATTTGAACGACGAGCTTCCGGCAAGGGA 20739 Query 106352 TAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTG-TGATTTCATG 106410 ||| ||||| ||||| | | ||| | |||||| || | || ||||| |||| | | Sbjct 20740 TAATAATTTACATCAATTATTTTGTTCAAATTTTTCGTCATAA-CTTTGATGATGTTTTT 20798 Query 106411 AAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGA 106470 | | | || |||| | | || | | || ||||||| | ||||| | || | || Sbjct 20799 CAACTCTCCAAAATCGTAGGATAGATTTTTTTGATTGACAAATTTTGGTAACGCAACCGA 20858 Query 106471 TGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAA 106530 || | ||| |||||||| | || || || || || | ||| || || || | Sbjct 20859 AGCTAGATTACAAACAGCTATTTCGTCTGGCGATGAATATTCAACAATCTCGGTGCAAAG 20918 Query 106531 GTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTT 106590 || || | || || || || | ||| ||||| ||| ||| | || || ||| || Sbjct 20919 ATTAGAGCATTTGATGGTGCCAAGATTTTTTTGATTAGATTTTCTATTACAATGATCTTT 20978 Query 106591 GTAGAGCATGTAGGGCGTCCCCGTCTCC 106618 ||||| |||| | || || || || ||| Sbjct 20979 GTAGACCATGAATGGTGTTCCGGTTTCC 21006 >seq8921 Length=5376 Score = 120 bits (132), Expect = 4e-22 Identities = 269/399 (67%), Gaps = 4/399 (1%) Strand=Plus/Minus Query 6904 TCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGG 6963 |||||||||| | | |||||| ||| ||| ||||| || | |||||| ||| Sbjct 3730 TCTATCAAGCTAGTACATCAGAGTTGTATGGCAAGGTGCGTGAAACGCCACAATCCGAAA 3671 Query 6964 AGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCG 7023 ||| || || || ||||| || || || || || ||| | || | | | ||| Sbjct 3670 CGACTCCATTTTATCCACGATCTCCTTATGGCGTATCGAAGCTATTCGCCTACTCGATCG 3611 Query 7024 TCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATG 7083 | ||||| || || |||||| |||| || | || || || ||||| |||| Sbjct 3610 TTGTTAATTATCGAGAAGCTTACGATATGTTCGCTGTCAATGGGATTCTTTTCAATCATG 3551 Query 7084 AATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTAC-CGAGG-GTATCAAACA 7141 ||||||||||| |||||| | ||||| |||| || || || ||||| || | || | Sbjct 3550 AATCACCGAGAAGAGGTGAAACGTTTGTGACAAGAAAAATCACTCGAGGTGTTGCGAA-A 3492 Query 7142 AATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTG 7201 | |||| | |||||| || | ||||| | ||||| | | | | | ||||| Sbjct 3491 ATTCATCTA-GGTGAATTAGAATATATTGAGCTTGGTAATCTTGATTCCAAACGGGATTG 3433 Query 7202 GGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAGGAAGCCGA 7261 ||| ||||| || || || |||||||| |||||| | ||| | |||||||| || | || Sbjct 3432 GGGCCACGCAAAAGATTACGTTGAAGCAATGTGGTTGATGATGCAACAAGATCAACCAGA 3373 Query 7262 CGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTGAG 7300 || | ||| | ||||| ||||| | |||||||| || Sbjct 3372 AGATTTTGTCATTGCAACCGGTGAAGCTCATTCAGTCAG 3334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589841712026400