Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq10223 178 2e-39
seq8921 120 4e-22
>seq10223
Length=44262
Score = 178 bits (196), Expect = 2e-39
Identities = 456/688 (66%), Gaps = 6/688 (1%)
Strand=Plus/Plus
Query 105934 ATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 105993
||| ||||| | ||||| |||||||| ||||||| || || |||||||| || || ||
Sbjct 20322 ATAAATGTTGGAAGTGTATGGTTCAAATGATTCATTGTTTCCTAAGATTTGAGCTGTCGA 20381
Query 105994 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTC 106053
|| || ||||| || || | | |||||| || || ||||| | || || |||
Sbjct 20382 TGCGGTCGGCATCGGAGCAACTAGAAGACTATTTCGTAGACCGTATTTAGCAATATTTTC 20441
Query 106054 CTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATATCAAATTGA 106111
|| | ||||| || || || | | ||||| | ||||||||||| ||||
Sbjct 20442 TTTCAATTTTTCCCAATCCCAGA-GATCGGTAGGTTTG-CGATCCCACATATCGTATTGG 20499
Query 106112 AGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCC 106171
|| | |||| || | |||||| || ||| | || ||||| | || ||| ||||
Sbjct 20500 AGAATACCTTTCGATGCGGGAGATCCTTCATAGGTTTCATAAGGTCCATGGATAGCAGCT 20559
Query 106172 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 106231
||||||||||| ||||| | | | ||| ||| || ||||| || || | |||||
Sbjct 20560 AATTCACAGCTAGCCTCTAATGCTCCGTAATAGATTGTTTCGAAAATTTGTATATTCAAT 20619
Query 106232 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCT 106291
| || |||||||| ||||| | || | |||||| || |||| || ||||||
Sbjct 20620 TTTTTCGCTTCATCACTTTCAAAAGGATATCTAAGCAAAATGAACGCATCAGCTAGACCT 20679
Query 106292 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGA 106351
|| || || | ||||| ||||||||||||||||| || || || | | ||||
Sbjct 20680 TGTACGCCGATTCCAATCGGTCTGTGTCGCATATTTGAACGACGAGCTTCCGGCAAGGGA 20739
Query 106352 TAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTG-TGATTTCATG 106410
||| ||||| ||||| | | ||| | |||||| || | || ||||| |||| | |
Sbjct 20740 TAATAATTTACATCAATTATTTTGTTCAAATTTTTCGTCATAA-CTTTGATGATGTTTTT 20798
Query 106411 AAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGA 106470
| | | || |||| | | || | | || ||||||| | ||||| | || | ||
Sbjct 20799 CAACTCTCCAAAATCGTAGGATAGATTTTTTTGATTGACAAATTTTGGTAACGCAACCGA 20858
Query 106471 TGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAA 106530
|| | ||| |||||||| | || || || || || | ||| || || || |
Sbjct 20859 AGCTAGATTACAAACAGCTATTTCGTCTGGCGATGAATATTCAACAATCTCGGTGCAAAG 20918
Query 106531 GTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTT 106590
|| || | || || || || | ||| ||||| ||| ||| | || || ||| ||
Sbjct 20919 ATTAGAGCATTTGATGGTGCCAAGATTTTTTTGATTAGATTTTCTATTACAATGATCTTT 20978
Query 106591 GTAGAGCATGTAGGGCGTCCCCGTCTCC 106618
||||| |||| | || || || || |||
Sbjct 20979 GTAGACCATGAATGGTGTTCCGGTTTCC 21006
>seq8921
Length=5376
Score = 120 bits (132), Expect = 4e-22
Identities = 269/399 (67%), Gaps = 4/399 (1%)
Strand=Plus/Minus
Query 6904 TCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGG 6963
|||||||||| | | |||||| ||| ||| ||||| || | |||||| |||
Sbjct 3730 TCTATCAAGCTAGTACATCAGAGTTGTATGGCAAGGTGCGTGAAACGCCACAATCCGAAA 3671
Query 6964 AGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCG 7023
||| || || || ||||| || || || || || ||| | || | | | |||
Sbjct 3670 CGACTCCATTTTATCCACGATCTCCTTATGGCGTATCGAAGCTATTCGCCTACTCGATCG 3611
Query 7024 TCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATG 7083
| ||||| || || |||||| |||| || | || || || ||||| ||||
Sbjct 3610 TTGTTAATTATCGAGAAGCTTACGATATGTTCGCTGTCAATGGGATTCTTTTCAATCATG 3551
Query 7084 AATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTAC-CGAGG-GTATCAAACA 7141
||||||||||| |||||| | ||||| |||| || || || ||||| || | || |
Sbjct 3550 AATCACCGAGAAGAGGTGAAACGTTTGTGACAAGAAAAATCACTCGAGGTGTTGCGAA-A 3492
Query 7142 AATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTG 7201
| |||| | |||||| || | ||||| | ||||| | | | | | |||||
Sbjct 3491 ATTCATCTA-GGTGAATTAGAATATATTGAGCTTGGTAATCTTGATTCCAAACGGGATTG 3433
Query 7202 GGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAGGAAGCCGA 7261
||| ||||| || || || |||||||| |||||| | ||| | |||||||| || | ||
Sbjct 3432 GGGCCACGCAAAAGATTACGTTGAAGCAATGTGGTTGATGATGCAACAAGATCAACCAGA 3373
Query 7262 CGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTGAG 7300
|| | ||| | ||||| ||||| | |||||||| ||
Sbjct 3372 AGATTTTGTCATTGCAACCGGTGAAGCTCATTCAGTCAG 3334
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589841712026400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |