Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq14534 82.4 9e-11 >seq14534 Length=9059 Score = 82.4 bits (90), Expect = 9e-11 Identities = 165/244 (68%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 159550 ATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAG 159609 ||||| || |||||||| || || || || || | | |||| |||| ||| || Sbjct 3268 ATGATCACCTATCCATCGACGTTCGGCGTCTTCGATGAAGATATCATTGAGATTTGTGAG 3327 Query 159610 ATTGTTCATGAGAATGGT---GGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAG 159666 || ||||| | ||| | || || |||||||||||||| ||| | ||||| ||| Sbjct 3328 ATGATTCATAAATGTGGATCGGCGCAAGTCTATCTTGATGGTGCCAATATGAATGCGCAG 3387 Query 159667 GTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAG 159726 | |||||| || | || |||||| ||||| | ||||| || | || || Sbjct 3388 CTTGGTCTATGCCGTCCTGGGGATTATGGTAGTGATGTTTCGCATCTGAATCTTCACAAA 3447 Query 159727 ACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAA 159786 ||||| || || || ||||| ||||||||||| || | || || || | || |||| Sbjct 3448 ACATTTTGCATCCCTCATGGTGGTGGAGGTCCCGGTATGGGGCCGATAGCAGTGAAAAAA 3507 Query 159787 CATC 159790 |||| Sbjct 3508 CATC 3511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587912566929600